FMO12045.5prime Sequence
1110 bp (1018 high quality bases) assembled on 2012-06-25
> FMO12045.5prime
CAGTCGACATGTCGCACGGTGGAGCCGGTGGCGGTCTGGGAGCTCAAACT
GTTGGAGCCGGCCAACTTGGAGGCGGTGCAGCGGCAGCTGGCGGTGGAGA
ATACCGCGAACTCCACTGGACGGTCTCAAGCGTAATGGACTCGTCTCGGG
TCTCCACCTGCCTCATATCAATGCTGCTGATAGTCTACGGCAGCTTTCGC
TCCTTAAACATCGAGCAGGAGGCCCGCGAGCGGGAGCAGAAGAAGCGAAA
TGAATCGATGACCAATCTTCTTACCGGCGAGCCCGTCGAGAAGGAACCAA
ATCTGTATTTCACAGCGGATAAATTCGCCACTCTGGACACGATGCATGCC
CTCTGTTTGCCTCTCGGAGCTTCCATCTCACTGCTCATCATGTTCTTCTT
CTTCGACTCGATGCAGCTGCTCTTCGCCGTCTGCACAGCGATTATAGCCA
CCGTGGCGCTGGCCTTTCTGCTGCTGCCCATGTGCCAGTACATCATCAGG
CCATGCACAGATGGAAAGCGATTCTCCTTCGGATTCTGCGGTCGCTTCAC
AGCCGCGGAGCTCTTCAGCTTTACGCTTTCGGTATCGATTGTGTGCATAT
GGGTGCTCACTGGCCACTGGCTGCTAATGGATGCAATGGGCATGGGCCTG
TGTGTGGCATTCATAGCGTTTGTGCGTCTGCCCAGCTTGAAGGTGTCCAC
GCTGCTGTTGACCGGCCTGCTCATCTACGACGTCTTCTGGGTATTCCTCT
CCTCGTACATCTTCAGCACTAACGTGATGGTCAAGGTGGCGACGCGACCC
GCCGATAATCCCGTGGGCATCGTGGCCAGAAAGTTGCATCTGGGTGGCAT
TGTGCGGGACACACCAAAGCTGAATCTGCCCGGAAGCTTGTTTTTCCCAG
CCTGCACATACCGGTCACTTCTCTATGCTGGGCCTGGGTGATGTGTGATG
CCGGGCCTGTTGCTCTGCTTCGTCTTGCGGTATGATGCGTACAGATGGCG
CAGGCGTCACATCGGATCCCACTTGTCACCGCCAAGGAGTTGGCTTCCCT
GGGGTGACATACTTTCATTGTCCCTTATTGGGTTATTCATGGGACCTGCT
AAACGGCACT
FMO12045.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SppL-RE | 2422 | CG17370-RE | 448..1547 | 8..1102 | 5055 | 97.9 | Plus |
| SppL-RD | 2782 | CG17370-RD | 649..1748 | 8..1102 | 5055 | 97.9 | Plus |
| SppL-RF | 2561 | CG17370-RF | 602..1686 | 8..1102 | 4820 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25886565..25887019 | 633..1082 | 1725 | 95.9 | Plus |
| 3R | 32079331 | 3R | 25885537..25885829 | 8..300 | 1435 | 99.3 | Plus |
| 3R | 32079331 | 3R | 25886307..25886498 | 442..633 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 25885880..25886020 | 301..441 | 690 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:21:17 has no hits.
FMO12045.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:48 Download gff for
FMO12045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17370-RE | 440..1550 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:33 Download gff for
FMO12045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SppL-RD | 642..1752 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:30 Download gff for
FMO12045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SppL-RD | 642..1752 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:30 Download gff for
FMO12045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25885530..25885829 | 1..300 | 98 | -> | Plus |
| 3R | 25885880..25886020 | 301..441 | 99 | -> | Plus |
| 3R | 25886307..25886498 | 442..633 | 100 | -> | Plus |
| 3R | 25886566..25887022 | 634..1085 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:33 Download gff for
FMO12045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21711252..21711551 | 1..300 | 98 | -> | Plus |
| arm_3R | 21711602..21711742 | 301..441 | 99 | -> | Plus |
| arm_3R | 21712029..21712220 | 442..633 | 100 | -> | Plus |
| arm_3R | 21712288..21712744 | 634..1085 | 96 | | Plus |
