Clone FMO12047 Report

Search the DGRC for FMO12047

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:47
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5021-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12047.5prime Sequence

695 bp (695 high quality bases) assembled on 2012-06-25

> FMO12047.5prime
CAGTCGACATGGCATCCGCTACGGTAAGAAATGTGCCGCTGCTCGACGAT
GACACGATACCCTTTGGCGAGGAGGACGAGATGCGGGATCCCAGTCGCGC
GGGTCAGAAATACACGCACCCGTACGTCACCTTCTTCCACCTGTTCTTCA
GGGGCGCCGCCATCCTGATCTATATGTTCTGCGGTTGGTTCAGCGACTCC
TTCATCACCAGCTTCGTTTTCGTGGTGCTCTTCCTGTCCGCCGACTTCTG
GACGGTGAAGAACATCTCGGGCAGATTGCTGGTCGGTCTCCGCTGGTGGA
ACTACGTCGACGACGATGGCGTATCGCACTGGGTGTTTGAGTCAAAGAAC
TCTGAATCCTACCAGAGTCGGGTCAACAAGAACGAGCAGCGCATCTTCTG
GCTGGGACTCATCCTCTGTCCCGTCTTCTGGGGCCTCTTCTTCCTGTTCG
CCCTATTCGGCCTGAAGTTCAAATGGCTACTGCTGGTAATGATCGCCATT
GCGCTGAATGCCGCCAATCTGTATGGCTACGTCAAGTGTAACTATGGTGC
CAATAAGGATCTGAATTCCGCCGCCACAGACTTTGTGAATACGCAGTTCT
TCAAGAATGCTGTGGACATCATGACAAGGCCCAGTGGCGCCCCACCGCCA
ACAAATGTACGCCCGACGGGAGTCGTTGCAAGCTTTCTAGACCAT

FMO12047.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5021-RC 1088 CG5021-RC 140..809 8..677 3320 99.7 Plus
CG5021-RD 1022 CG5021-RD 156..800 33..677 3195 99.7 Plus
CG5021-RA 933 CG5021-RA 140..794 8..677 3085 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8967566..8967892 351..677 1605 99.4 Plus
3L 28110227 3L 8967278..8967516 112..350 1180 99.6 Plus
3L 28110227 3L 8967128..8967211 33..116 420 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:14:05 has no hits.

FMO12047.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:32 Download gff for FMO12047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5021-RC 123..804 1..684 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:06 Download gff for FMO12047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5021-RC 134..815 1..684 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:54 Download gff for FMO12047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5021-RC 134..815 1..684 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:54 Download gff for FMO12047.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8967128..8967210 33..115 100 -> Plus
3L 8967282..8967516 116..350 100 -> Plus
3L 8967566..8967898 351..684 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:06 Download gff for FMO12047.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8960228..8960310 33..115 100 -> Plus
arm_3L 8960382..8960616 116..350 100 -> Plus
arm_3L 8960666..8960998 351..684 98   Plus