FMO12048.5prime Sequence
1102 bp (968 high quality bases) assembled on 2012-06-25
> FMO12048.5prime
CAGTCGACATGCGTTTGTTAAAGGAGGAAATTGCCCAGTTTCACGAGCAG
TCGCTGGAGAAGTATGATGGACTGGATCCGCATGATCTGTATGTACTATA
TAAGAAGCTTCAGATGGAGCTGGAGCTCATCCAGGTGCAGGAGGATTATA
TCAAGGAGGAGCAACGCAATCTGAAGAAGGAGTTCATACACGCTCAGGAG
GAAGTTAAGCGCATAAAAGCCGTGCCTCTGGTCATTGGCCAGTTTCTGGA
GGCGGTGGATGAAAACAACGGCATAGTGGCCTCCACCACCGGATCCAATT
ACTATGTTCGAGTGCTATCCACCATTGACAGGGAGCAACTGAAGCCGTCC
TCTTCGGTTGGGCTGCACAAGCAAAGCAATTGTCTGGTCGATCTGGTGCC
ACCGGAGGCGGACAGCACCATATCGATGCTATCGCCGGATGAGAAACCGG
ATATCAGCTACTCCGACATTGGAGGCTTGGACATCCAGAAACAGGAGATA
CGCGAGGCTGTCGAGCTGCCCTTGACCCACGCCCAGCTTTACAAGCAAAT
TGGCATCGATCCCCCACGCGGCGTCCTCCTTTTTGGACCACCTGGATGTG
GCAAAACCATGCTGGCCAAGGCGGTGGCCCATCATACAACTGCATCATTT
ATTCGTGTCGTGGGCTCCGAGTTCGTCCAGAAATACCTAGGCGAGGGGCC
ACGCATGGTGCGAGATCTTTTCCGCCTGGCCAAGCAGAATTCTCCTTCAA
TTATCTTCATTGATGAGATCGATGCGATTGCCACCAAGCGCTTTGATGCA
CAGACAGGTGCTGATCGCGAGGTGCAGCGCATCCTGCTGGAGCTACTCAA
CCAAATGGATGGCTTTGATGAGACCACCAACATTTAAGTTATCATGGCCA
CCAAACGTGAAGATACCTTAGATCCGGCTTTTGTTACGACCCGGCCGTTT
GAATCGGAAAATTGGTTACAATTGCCGGATCGTCGCCGAAGCGGCTTAGT
TTTCACCACATCACCTCGAAATGATGTGGGTGAGGAATGTGAATCTGAGA
AGTCTTGCCGTCCGGACAAATCTCATGCGGATACTATGCATTTGTCTAGA
GC
FMO12048.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3R-RD | 1414 | CG9475-RD | 34..1137 | 9..1101 | 4925 | 97.3 | Plus |
| Rpt3R-RC | 1432 | CG9475-RC | 52..1155 | 9..1101 | 4925 | 97.3 | Plus |
| Rpt3-RB | 1553 | CG16916-RB | 348..1249 | 120..1020 | 1650 | 79.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9755619..9756163 | 553..9 | 2725 | 100 | Minus |
| 3R | 32079331 | 3R | 9755102..9755572 | 1021..552 | 2030 | 96.8 | Minus |
| X | 23542271 | X | 11125580..11126364 | 120..904 | 1615 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:14:09 has no hits.
FMO12048.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:32 Download gff for
FMO12048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3R-RC | 28..1079 | 1..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:09 Download gff for
FMO12048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3R-RC | 43..1094 | 1..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:55 Download gff for
FMO12048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3R-RC | 43..1094 | 1..1050 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:55 Download gff for
FMO12048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9755073..9755571 | 553..1050 | 96 | <- | Minus |
| 3R | 9755620..9756171 | 1..552 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:09 Download gff for
FMO12048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5580795..5581293 | 553..1050 | 96 | <- | Minus |
| arm_3R | 5581342..5581893 | 1..552 | 99 | | Minus |
