FMO12049.5prime Sequence
290 bp (290 high quality bases) assembled on 2012-06-25
> FMO12049.5prime
CAGTCGACATGCCAAGTCATTGGCCATGTCTTTTGATCCTGCTTGTTGTA
ATCGTACTCATCCTAGCTGTTTGCGGATACTACACAATTATTCACCCGAA
ACAGATTCATCTGGAAAGCTGTTTTCTCAAAGGCGGGGCCTGCCGGGAAA
CGTGGAACTGCGACGAAAGGTACCGCAGTCGCGTTCGCACCACGTGTATC
AACAAACGAAAGGTCTGCTGCATGCCCACGCTCCAGATAAAGAGCATTCA
GGATGCCGAGTACTACATCGAGGCAAGCTTTCTAGACCAT
FMO12049.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34286-RB | 686 | CG34286-RB | 95..358 | 9..272 | 1320 | 100 | Plus |
| CG34286-RA | 520 | CG34286-RA | 95..358 | 9..272 | 1320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19715514..19715677 | 272..109 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 19715734..19715833 | 108..9 | 500 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rooA | 7621 | rooA ROOA_LTR 7621bp | 5363..5388 | 131..106 | 103 | 88.5 | Minus |
FMO12049.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:42 Download gff for
FMO12049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34286-RA | 95..368 | 9..283 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:21 Download gff for
FMO12049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34286-RA | 95..368 | 9..283 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:05 Download gff for
FMO12049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34286-RA | 95..368 | 9..283 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:05 Download gff for
FMO12049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19715504..19715677 | 109..283 | 97 | <- | Minus |
| 3R | 19715734..19715833 | 9..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:21 Download gff for
FMO12049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15541226..15541399 | 109..283 | 97 | <- | Minus |
| arm_3R | 15541456..15541555 | 9..108 | 100 | | Minus |
