FMO12052.5prime Sequence
1152 bp (1030 high quality bases) assembled on 2012-06-25
> FMO12052.5prime
CAGTCGACATGTCGAGTGCAGAAGACGGCGAGCTGGATCCCCAAATTCAG
ATTGAACTGGAGAATCTCAATAGTGCAACCGATGAGATTAATAAGCTAGA
AATCGAGCTAGAGGAGGCTAATTCCACCTTTCGCATCCTGTTAAATGAAT
CTACACGCCGCCTTAAAGTTTCCTCCAAAAAGTTGGGCAACTGCATAGAG
AAGGCTAGACCCTACTACGAGGCATTGGACAAGGCACGCGAGGCACAAAT
CGAATGCCAAAAAGCAGCGGTTAAGTTCCAGCGAGCTAATGAAATCCATG
CCGCAGCCAAGGAGACGGTGGCGCTTGCTGAGCAGCGTTTTATGTCCAAC
TCGCACGAATGGCAGTTCGACAATGCCTGGCAGGAGATGCTTAACCATGC
TACCCAGAAGGTGATGGATGCCGAAACGCAGAAAGCCGACTGTCATGCTG
AGCACCAGAGGCTCACCAAACTTTTTAACGCCGCCGAGCAAAAGCTGCAA
CAGCTTGAGGATCGTTTTCGTCGTAGCATCAACAAGTCACGCCCGTACTT
CGAAGAGAAGCAGGTGTGTCAGGATCAGCTGCAGACACAAAAAAACCGCA
TTCAGGAGCTGCAGCAGCAGGTGGCCGGTGCTAAGAGCACCTACTCCACG
GCCTTACGCAATCTGGAGAGGATCAGTGAGGATATACATAGGCAGAGGGG
AGATTTTCCCACTCCACCAGGACCCCGCGAGCCGGGTGTGGGAGCAGAGT
TAAACTCTCCGACTTCCAGTGCCTTGCCATCACTGCCCGATTTCCAGCTG
GAGCTTGAGAAGTGCGACTATCCCTCCATAGCGGGCAGCCAGATGTCTTT
GGGCGCAAAAACTCCCCAAGCAGCTGCCGAAACTGAGATGAGGAAGATGC
CTGCGACTACGATGAACGGGAGCCGGGGAGCCTCAGAGTGTAGTGGATGA
ACGCGATTTGAGCGCTGCGACAGAACGTCAGATCCTGCCGGTGCGTCCCA
TCGAGGGCGGAGATGGACAGCAGCAGACGATGTGTGGGGAGCATGAACTG
AAGCCACGTGACAGCTGAATCACTGGATGATGCTGAAAGTAACAGCCAAA
GCAGCAAACGACCGCTTGAGTCACGGAACGCACCCGAATCCATGGGGCGC
CG
FMO12052.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pcs-RB | 2216 | CG7761-RB | 520..1678 | 9..1152 | 5175 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14989922..14990740 | 291..1100 | 3425 | 97.1 | Plus |
| 2R | 25286936 | 2R | 14989680..14989859 | 112..291 | 900 | 100 | Plus |
| 2R | 25286936 | 2R | 14989548..14989616 | 46..114 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 14981782..14981823 | 9..50 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:21:29 has no hits.
FMO12052.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:50 Download gff for
FMO12052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcs-RB | 498..1632 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:40 Download gff for
FMO12052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcs-RB | 512..1646 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:35 Download gff for
FMO12052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcs-RB | 512..1646 | 1..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:35 Download gff for
FMO12052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14981774..14981823 | 1..50 | 94 | -> | Plus |
| 2R | 14989553..14989619 | 51..116 | 97 | -> | Plus |
| 2R | 14989685..14989859 | 117..291 | 100 | -> | Plus |
| 2R | 14989923..14990784 | 292..1137 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:40 Download gff for
FMO12052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10869279..10869328 | 1..50 | 94 | -> | Plus |
| arm_2R | 10877058..10877124 | 51..116 | 97 | -> | Plus |
| arm_2R | 10877190..10877364 | 117..291 | 100 | -> | Plus |
| arm_2R | 10877428..10878289 | 292..1137 | 96 | -> | Plus |
