FMO12053.5prime Sequence
1099 bp (981 high quality bases) assembled on 2012-06-25
> FMO12053.5prime
CAGTCGACATGGAAACTAAAGCTGGCTTAAGTGCGCTGGAGGAAAGGTCC
CTGAAAGGTTCAGAGAAACTTAAAATGCTGGACATCACTCGCGACAAGCC
GGTGAAGGTGGCCGTCAAAGTGGCCGTTCCTGTGCGGGATCACCCAAAGT
TCAATTTCGTGGGCAAGCTGCTCGGACCCAAGGGCAACTCGATGAAGCGC
CTGCAGGAGGACACCATGTGCAAGATGGCCGTTCTGGGACGCGGATCGAT
GCGAGACCGGCGGAAGGAGGAGGAGCTGCGGGGCAGTGGCGACAGTCGCT
ACGCCCATCTCTTCGAGGACCTGCACGTCGAGATCTCGACCTTCGCCGCT
CCGGCGGAGGCCCATGCTCGGATAGCCTACGCTCTGGCGGAAGTGCGCCG
CTTTCTGGTTCCGGACTACCACGATGACATCCGCCAGGAGCAAATGTGGG
AAATGCAGGCGCTGACGTCCACGCCCGCACTGGGTGCCCACTCGCTGGAG
GATTCGCATAGCCCTACCATCAACAGCAGTAGCCAGGTGGGCGGCACCAC
CAACTCCTCCTCCAACGGGGCCAGTGGGCGTGGCCTGGGCGGCGGACTAG
CCGACATGGACACGTCCAACGATGACAAATCGGACGACGCCAGCGGCATG
GAGTGCCTGTCGGCAGTCGACAAGCTTGACTGCTCGTCCAGCTGCGCCAG
TCTGGGCATCAGTGGCATCACCACCATCAGCACCACCAGCCCCGAGCATC
CGCATCCGCACCAGCACCACCAGCAGCACCCACAGCACCAACAGCACCAC
GCCCACCTGCACCCAGCACACGCCCATGGAAACCAGCAGCAGCAGCAGCA
GGTCCAGCACCAACACAGCCAACAGGCGCACTTCAACCAGCTCCTGCAGC
AGCTCACGTGGAGCCAGTGCCGCAGCGCTGCTGCGGGGAGCATCTCCCTT
GAAAGACGACTCCGGCGAACGCGGCGGCATTGCACACCCAGCATGGAAGT
GGCACTCCAGCATCAGCCACACCGCAGATCGGAAGATTCTGAAGCGTCAC
GGAATGGGGCACCATGCCGCTGACCACTACTAGCGGTGAAACTCCGCCC
FMO12053.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10384-RE | 3849 | CG10384-RE | 753..1800 | 9..1045 | 4795 | 97.8 | Plus |
| CG10384-RD | 2509 | CG10384-RD | 753..1800 | 9..1045 | 4795 | 97.8 | Plus |
| qkr58E-1-RD | 1902 | CG3613-RD | 494..629 | 142..277 | 245 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22469585..22470156 | 413..980 | 2525 | 97.7 | Plus |
| 2R | 25286936 | 2R | 22466682..22466948 | 148..414 | 1335 | 100 | Plus |
| 2R | 25286936 | 2R | 22466475..22466563 | 61..149 | 445 | 100 | Plus |
| 2R | 25286936 | 2R | 22460092..22460146 | 9..63 | 275 | 100 | Plus |
| 2R | 25286936 | 2R | 22414825..22414960 | 277..142 | 245 | 78.7 | Minus |
| 2R | 25286936 | 2R | 17471170..17471264 | 148..242 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:14:35 has no hits.
FMO12053.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:44 Download gff for
FMO12053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10384-RC | 1..972 | 75..1036 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:25 Download gff for
FMO12053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10384-RD | 750..1790 | 2..1036 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:09 Download gff for
FMO12053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10384-RD | 750..1790 | 2..1036 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:09 Download gff for
FMO12053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22460089..22460146 | 2..63 | 93 | -> | Plus |
| 2R | 22466478..22466563 | 64..149 | 100 | -> | Plus |
| 2R | 22466684..22466947 | 150..413 | 100 | -> | Plus |
| 2R | 22469586..22470156 | 414..980 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:25 Download gff for
FMO12053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18347594..18347651 | 2..63 | 93 | -> | Plus |
| arm_2R | 18353983..18354068 | 64..149 | 100 | -> | Plus |
| arm_2R | 18354189..18354452 | 150..413 | 100 | -> | Plus |
| arm_2R | 18357091..18357661 | 414..980 | 97 | -> | Plus |
