Clone FMO12054 Report

Search the DGRC for FMO12054

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:54
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31975-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12054.5prime Sequence

1134 bp (1000 high quality bases) assembled on 2012-06-25

> FMO12054.5prime
CAGTCGACATGGGTGTGGACAAGCTGCCCGAAATTCGAGCTCTTAGTGAA
GTGGTTGAACCCCACGTTTCAGGGTCCCGCCTCCTTAATTATCACACAAG
CAGTCTGACGAAACCGGGCGATAACTACGGAAGCGTTCTCCTGGCAATTC
ATGCCCGGCTGCAGAAATCCAATGGTGAGTCGTTTGAAGAGCAGCTGGTG
GCTAAAGTGCCTCCGATCGACCCCAAGTACTGGCAGTTTTTCCAGCCTGA
GCAGACATGCCTCACTGAGAACGCTGTTTACAAGATTTTGGCCCCTGCTC
TGGCCACCCTTCAAGATGAAGCTGGCGTCCCTGACGAGAGCCAATTTAAA
GGATTCCCTCGCTTCTATGGCTGTCGCGAATCCCTCGAATCCAACTCATC
AAAGGTAGATCAAAATGCCGTGTTGGTGCTGGAAAATTTGCGTAGCAGTG
GCTACGTCTCCGGCCAGAGGCTAAAAGCTTTCGATCTGGCCCACACGTTG
CTAGCACTTAAATATATGGCCGAGTTCCACGCCCTGTCTCTAGCTCTGCG
GATCCTCAGACCAGAGGTGTTCCGGGAACAGGTCCGTCCGTTCTTTAAAA
AGTTCGATTGGCATGCTGAAGCGCCCGAGTGGAAGTCGGTAATGAAGGCA
GAGACTCTGGAGGACATTCGTCGAGCCACCAACAACGACTCCAGACTTGT
AGCCCGAATGAAAGAGTTGTCGGACCAGTTTTTTGAATTCTTAGCAGCCG
CCCCAGATAGACCCGATGGGCCTTTTACCAGCATTATACACTGTGACTTC
TGGATAAATAATATAATGTTTCGTTACGGGCCCACTGGAACACCCGTCGA
GCTGAAAATTATCGACTTTCAGACGGCACAGTACGATTCAGTGGTGCATG
ACATAATCTCGTTTTTGCTATCAAGCGTTGATACGGCTATCTGAGTAGAG
TTCGAACAATGTAGAGGCCTGCTATGAGCTTTTGAGCGTTGTCTGCACGT
GTGGGAGCTAAATTGAGTCACCACTTTTAAGAGTTCCGCTGAATGAAGAG
GGTGGCGTACTAACAGGTCCCCACGCATCTTTATGACCGCCTTATATTGC
TGAAATGGTCTTATCGGCATTCAGCTGAGACGCC

FMO12054.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31976-RB 2206 CG31976-RB 58..1166 7..1099 5045 97.9 Plus
CG31975-RC 2206 CG31975-RC 58..1166 7..1099 5045 97.9 Plus
CG31975-RB 1335 CG31975-RB 58..1166 7..1099 5045 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 140113..140935 829..7 4115 100 Minus
2L 23513712 2L 139761..139955 1015..828 650 94.9 Minus
Blast to na_te.dros performed on 2014-11-28 03:21:33 has no hits.

FMO12054.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:50 Download gff for FMO12054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31975-RC 51..1166 1..1099 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:42 Download gff for FMO12054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31976-RB 51..1166 1..1099 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:36 Download gff for FMO12054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31975-RB 51..1166 1..1099 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:36 Download gff for FMO12054.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 140114..140938 1..828 99   Minus
2L 139741..139954 829..1032 93 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:42 Download gff for FMO12054.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 139741..139954 829..1032 93 <- Minus
arm_2L 140114..140938 1..828 99   Minus