Clone FMO12055 Report

Search the DGRC for FMO12055

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:55
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG34150-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12055.5prime Sequence

437 bp (437 high quality bases) assembled on 2012-06-25

> FMO12055.5prime
CAGTCGACATGTCCAATTTGCGGCGCCAGGTTCTCAGTGCTTTCAAGAAG
CTCCACCGTACACGACAATACGTTTTTCAGGGGGATGCCAATGCTTTGGC
GGCGGGACGACTAAAAATCAACGAATCTTTCCTGCAGAATCGTAATGAAA
GCAGCGAGGATGAAATTCAAAAGATGATCAAGCTGGCGCAGGACGTGGAT
TTGGAGCTGCGAACGAATGTCATCCAAGCCCAGAAAAAAGAGGATGGTGT
TTATGAACTAAGGATCACGCCAGAGACAACGCGACTCGACAATGTGGTCT
TTAATCCTGACGCAATTATCGAAAAACCGCGCAGGCAACGCGGCGACAAA
AACACTGAAGGTTGCTGCGGTGGCGCTGCGATGGCGGCGCTGGAAGCCGA
AGTCCAGGCCCGCAACAAAGCAAGCTTTCTAGACCAT

FMO12055.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG34150-RB 495 CG34150-RB 16..426 9..419 2055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24814697..24814861 255..419 825 100 Plus
3R 32079331 3R 24814345..24814492 26..173 740 100 Plus
3R 32079331 3R 24814551..24814634 172..255 420 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:14:38 has no hits.

FMO12055.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:46 Download gff for FMO12055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34150-RB 16..429 9..423 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:27 Download gff for FMO12055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34150-RB 16..429 9..423 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:10 Download gff for FMO12055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34150-RB 16..429 9..423 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:10 Download gff for FMO12055.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24814277..24814297 9..29 100 -> Plus
3R 24814349..24814492 30..173 100 -> Plus
3R 24814553..24814634 174..255 100 -> Plus
3R 24814698..24814864 256..423 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:27 Download gff for FMO12055.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20639999..20640019 9..29 100 -> Plus
arm_3R 20640071..20640214 30..173 100 -> Plus
arm_3R 20640275..20640356 174..255 100 -> Plus
arm_3R 20640420..20640586 256..423 98   Plus