FMO12056.5prime Sequence
1150 bp (1049 high quality bases) assembled on 2012-06-25
> FMO12056.5prime
CAGTCGACATGGGCGTCTGCACCGAGGAGCGCCCTGTGATGCATTGGCAG
AGCGCAAGATTTCTTGGGCCCGGCGCAAGGGAGAAAAGTCCAACACCACC
TGTAGCACATCAAGGGAGCAATCAATGTGGCAGTGCTGCAGGTGCAAATA
ACAATCACCCATTGTTCCGCGCGTGCTCCTCATCCTCGTGTCCAGATATT
TGTGATCATAGTACAAAGCCATTTGGCAACGCTTACGGCACCGAGTCATT
TAGAAGCTACGAAACAGCCGATCGTGCTACCTTTGAGGACTCAGCCGCCA
AATTCTCCATCAGCCGCAGTCGAACAGACTGCACGGAGGTCAGCGACGAG
ACGACGTCGGGCATATCATTCAAGACCGAACCCTTCGGACCGCCCAGCAG
TCCCGAGTCCACAAGCGATAGCAAAATAACGCGCAACCTCGACGACTGCT
CCGGCTGCGGACGTCAGATACAGGATCGCTTCTACCTCTCCGCTGTGGAA
AAACGGTGGCATGCAAGTTGCCTACAGTGCTACGCCTGTCGGCAGCCGCT
GGAACGGGAATCCTCATGCTACTCACGTGACGGCAACATTTATTGCAAAA
ACGATTATTATAGTTTTTTTGGTACTCGCCGATGCTCGCGCTGCCTGGCC
TCCATCAGCTCCAACGAGCTGGTCATGCGCGCCAGAAATCTTGTTTTTCA
CGTCAACTGCTTCTGCTGCACTGTCTGCCACACGCCACTGACAAAGGGAG
ACCAGTACGGCATCATCGACGCCCTCATCTACTGCAGGACCCACTACAGC
ATAGCCAGGGAGGGGGATACCGCCTCATCCAGTATGAGCGCCACCTACCC
GTACAGCGCCCAGTTCGGCTCACCCCACAACGACTCCTCGAGCCCGCACT
CGGACCCTAGTCGGAGCATTGTTCCTACGGGCATCTTTGTGCCCGCGTCC
CACGTAATCAACTGACTGCCGCAGCCAGCTCGTCAAAAGGGCAGCCTCCC
CAAGCGCAGCCCAAGGACAATCGAGGCGTTCACCCGCTAACATAGATCTC
ACACTGATACGTGAACCTTTGGGCCGAAGCTCCGCACTTAGCCTTCCTCC
GCCGCGCCACAACCGAATGCGACCTCGTTTAAGGCAATCACCCAGCCCTC
FMO12056.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ap-RC | 3089 | CG8376-RC | 972..2095 | 7..1133 | 5185 | 97.9 | Plus |
| ap-RA | 4114 | CG8376-RA | 972..2098 | 7..1133 | 5145 | 97.6 | Plus |
| ap-RE | 2149 | CG8376-RE | 73..1155 | 48..1133 | 4980 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5717281..5717500 | 474..255 | 1100 | 100 | Minus |
| 2R | 25286936 | 2R | 5708611..5708869 | 1045..786 | 1095 | 97.3 | Minus |
| 2R | 25286936 | 2R | 5717555..5717764 | 256..47 | 1050 | 100 | Minus |
| 2R | 25286936 | 2R | 5708925..5709105 | 788..608 | 890 | 99.4 | Minus |
| 2R | 25286936 | 2R | 5716649..5716790 | 613..472 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 5725821..5725861 | 47..7 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:22:44 has no hits.
FMO12056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:46:03 Download gff for
FMO12056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RC | 963..2013 | 1..1051 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:21 Download gff for
FMO12056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RC | 965..2015 | 1..1051 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:10 Download gff for
FMO12056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RC | 965..2015 | 1..1051 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:10 Download gff for
FMO12056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5717282..5717498 | 257..473 | 100 | <- | Minus |
| 2R | 5717555..5717763 | 48..256 | 100 | <- | Minus |
| 2R | 5725821..5725864 | 1..47 | 93 | | Minus |
| 2R | 5708611..5708867 | 788..1045 | 97 | <- | Minus |
| 2R | 5708926..5709099 | 614..787 | 100 | <- | Minus |
| 2R | 5716649..5716788 | 474..613 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:21 Download gff for
FMO12056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1604154..1604293 | 474..613 | 100 | <- | Minus |
| arm_2R | 1596431..1596604 | 614..787 | 100 | <- | Minus |
| arm_2R | 1596116..1596372 | 788..1045 | 97 | <- | Minus |
| arm_2R | 1604787..1605003 | 257..473 | 100 | <- | Minus |
| arm_2R | 1605060..1605268 | 48..256 | 100 | <- | Minus |
| arm_2R | 1613326..1613369 | 1..47 | 93 | | Minus |
