FMO12059.5prime Sequence
1162 bp (1034 high quality bases) assembled on 2012-06-25
> FMO12059.5prime
CAGTCGACATGGCTCACCCACGGAAGGCAGTTGCGACACCAGCAACACTT
CAACTTGGCCCACCAGCACAAACAGCACAAAGCCCGGCAGCAACATTGCG
GCACAGCAGAACAGCCTCAAGTTCAAGGCGGCTATCGTTAATCAGATGTT
TTATATCCTGCCACACGTTCAACTTGTTCCTGCTGCTTCTCCTGTTGGCC
AGCGGAGTCCGTGCTGCCAGCAAGCTGGCCACTCGGAGCAACAAAACATC
GGGCTCATCGACAGCATCGGGAGTCGGAGCCGGAACAGCGGCAACTTCGG
CAGCGGCGGCGGCAGCGTCAGGAACACCCATTTGGGATCATGCCATCGAT
TTGAATGACGATTTTCGCATACTATGGCAAATCATTAATCAGGATATAAC
ATTTGAAATACAGGCACGTACCCTGGGCTACGTCGGGTTCGGATTCTCGC
CCGATGGCAATCTGGCTGGTGCCGATATGGCCATCGGCTGGGTGGACAAG
GGTCAAACCTATTTTCAGGATCGACACGTCACACGGAATGGAGACCCCGA
ACCGGTGGTGGATCCCTCGCAGGATTATATGCTGATGCTGGGCTACGAGA
ACGCGACCCACACGGTCCTCCGCTTCCGACGCAAACTGGACACATGCGAC
CCCAGCCACGACATCGCCATCACGAACGACACGATGCGCCTGCTGTACAT
GTATCACGCCCAGGATCCGCCGCACGGCTCGGTGCGTCCTGCACCCTTCC
GGATCCGGCCCGCGCCTTCCGCCCCTACCGCCCCATGGTCCTCATGCAGC
GCGCCCAGCTGCCGATGCCCTCACCCACGCACGACGAGCGCGTGCGAGTC
CTCGAGCTGCGCAACGAGGATGTGGAGCTGCCCGCCGGCGACCTACCGCT
CTTCTGTGCAAGATGTTCAAGCTGGAGACATCATCGCAAGCACCACCTGA
TCCGGTACGAGCCGATTTATGATTCATCGTCAGCGTGCACTACTTGCAGC
ACATTACGCTTGCACGAGTGCCAGGTGCCCACGCGAGCCTGGAGAAATGC
ACGCGAGCAGCCGCCGTGCCTCGAGCCCGATCATCGCTGCGTGCAGCCAT
TCGTGCCCTCCTGTCGCGACAGCGAAGCTTTACTTTACCCATGAGCCGTA
CCGATCGATCCG
FMO12059.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf413-RC | 8353 | CG12673-RC | 1028..2174 | 9..1135 | 5050 | 97.2 | Plus |
| olf413-RB | 3443 | CG12673-RB | 1028..2174 | 9..1135 | 5050 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22184093..22184603 | 9..519 | 2555 | 100 | Plus |
| 3L | 28110227 | 3L | 22221699..22221984 | 674..955 | 1215 | 98.3 | Plus |
| 3L | 28110227 | 3L | 22206827..22206985 | 516..674 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 22222487..22222568 | 955..1035 | 250 | 95.2 | Plus |
Blast to na_te.dros performed 2014-11-28 03:21:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 8329..8363 | 299..333 | 112 | 80 | Plus |
FMO12059.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:48 Download gff for
FMO12059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf413-RB | 996..2086 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:35 Download gff for
FMO12059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf413-RB | 1022..2112 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:32 Download gff for
FMO12059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf413-RB | 1022..2112 | 1..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:32 Download gff for
FMO12059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22184087..22184602 | 1..518 | 99 | -> | Plus |
| 3L | 22206830..22206985 | 519..674 | 100 | -> | Plus |
| 3L | 22221700..22221984 | 675..955 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:35 Download gff for
FMO12059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22177187..22177702 | 1..518 | 99 | -> | Plus |
| arm_3L | 22199930..22200085 | 519..674 | 100 | -> | Plus |
| arm_3L | 22214800..22215084 | 675..955 | 98 | -> | Plus |
