FMO12061.5prime Sequence
849 bp (849 high quality bases) assembled on 2012-06-25
> FMO12061.5prime
CAGTCGACATGTCCTGCACCGTTTCCGAGCTGCCCAGTGGCTGTCGATTG
CGCGGCATGACTGCATCCTCACAGCAAAGTGCCGCCAACAATAGTGGCAA
CAATGGGAATGGCAATGGGAACGGTGGCGGCGGGGGCGTCGTCGGAGGTG
GCGGCAGCCTGGGCGGAGTATCGCCCACCGTGGGCGGCAGCGTGGGAATC
CTCGGCTCCACGTCCAACGTGCTGCAGGAGTCGAACGCGACCACGTTTCA
GCGTCCGCAGTCGCAGAAGCCTTGCTGCTTCTGCTGGTGCTGCTGCTGCT
CCTGCTCCTGGGCCAAATGTCTGGCCATCAAGAATGCCGATGAAAATGCC
CCCACGAAGCGAGATCTGGTAAATGCCGAATTCTTGGATGGCGAGCAACC
CACACTGGAGGAAATCCGCAGCTGGGGCAAAAGCTTTGACAAGCTGATGA
AAAGTACAGCTGGTCGAAAGGTGTTCCAGAACTTCCTGCGCAGCGAATTC
AGTGAGGAGAACATCCTATTCTGGCTGGCCTGCGAGGATCTCAAGAAGGA
GAATAGCCCAGAGTTGGTGGAGGAGAAGGCGCGCCTCATCTACGAGGACT
ACATCTCGATCCTGTCGCCCAGGGAGGTGTCGCTGGACTCCAGGGTCCGC
GAGATTGTCAACCGGAACATGATCGAGCCCACGACGCACACCTTCGACGA
AGCTCAAATCCAGATCTACACACTGATGCACAGAGACTCATATCCGAGAT
TCCTAAACTCTCAAAAGTTCAAGACACTAGCTCAACTGCAAGACAACTCG
AATGCCGGTTTCCAAAGCGGATAGTCCAACTGCAAGCTTTCTAGACCAT
FMO12061.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhit-RB | 2873 | CG5036-RB | 1689..2511 | 8..831 | 4095 | 99.9 | Plus |
| Dhit-RC | 4762 | CG5036-RC | 1689..2502 | 8..831 | 3950 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17795126..17795429 | 8..311 | 1520 | 100 | Plus |
| 2R | 25286936 | 2R | 17797325..17797616 | 457..748 | 1460 | 100 | Plus |
| 2R | 25286936 | 2R | 17797053..17797131 | 319..397 | 395 | 100 | Plus |
| 2R | 25286936 | 2R | 17797683..17797766 | 747..831 | 375 | 98.8 | Plus |
| 2R | 25286936 | 2R | 17797202..17797263 | 398..459 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:14:52 has no hits.
FMO12061.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:50 Download gff for
FMO12061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5036-RB | 1671..2499 | 1..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:37 Download gff for
FMO12061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5036-RB | 1683..2511 | 1..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:16 Download gff for
FMO12061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhit-RB | 1683..2511 | 1..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:16 Download gff for
FMO12061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17795120..17795428 | 1..310 | 99 | -> | Plus |
| 2R | 17797046..17797131 | 311..397 | 93 | -> | Plus |
| 2R | 17797202..17797263 | 398..459 | 100 | -> | Plus |
| 2R | 17797328..17797616 | 460..748 | 100 | -> | Plus |
| 2R | 17797685..17797766 | 749..831 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:37 Download gff for
FMO12061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13684833..13685121 | 460..748 | 100 | -> | Plus |
| arm_2R | 13685190..13685271 | 749..831 | 98 | | Plus |
| arm_2R | 13682625..13682933 | 1..310 | 99 | -> | Plus |
| arm_2R | 13684551..13684636 | 311..397 | 93 | -> | Plus |
| arm_2R | 13684707..13684768 | 398..459 | 100 | -> | Plus |
