FMO12062.5prime Sequence
1128 bp (1052 high quality bases) assembled on 2012-06-25
> FMO12062.5prime
CAGTCGACATGGAAATCGCACCACTGATCAATAACGCCGTCGCTGTCGTC
ACAGCCTCTGCCTCTGCCGCCGTCTCTGCCTCTGCTAGCGTCGGCAGTAG
CAGCAAGGATGATAACGTCAACAATCTAGCGTTGCTCGCGTCGCTGACTT
TACAAAAAGTGCTAAATATCAACAATAACAATAACCAGCACAGCAAGAAC
AACAACCACAGCGACAATAGCAATAGCAAACAACACGAGCAACAAAAACA
GCAGCAGCAACCACAACGACGAAACCTCGACATTAAAAGCGAGTATGATG
TACTAAACCAATTGCTAAAAACTGGAGCTGTTTTCACCGCCACGCCCACA
GCGCCAATTGCCATCGAAAGGAGGAAGCAGACGCAGCAGCAGCAACGTCC
ATATGCACAACAGGCACATCAACAGCAGCAGCAGAAGCAACGCCTAAACT
CATCCATATCATCGACCCACTCATCGACATCGACAAACTCCTCCTACGGC
AGCTCATCATCGGAGGATGCTGCAGGCACATCTGCGCCAACGGGAGCAGG
TGAAGTTGTCACATCAGCAGCATTAACACCAAGAGCAAGCACCACGAAGG
CGTCCAGCAATAAATTGCCAGAGAAATCGAAAATTCCGTCCGATATACTT
GATGATCTGGCCAGTCGATTTATAATCAATGTTCCGGACATGGAGCTAAA
CAATCTAATACGTATGTGTTTCCAAATCGAACTGGCCCATTGGTTCTATT
TGGATTTCTTTTGTGCCCCCGAATCTGGCGAGGATGGCGAGACCCCGAAG
TGCGTGCAACGAAAGCTGCCATCGGTGGGCATCAAGCAGTTTGCCATGCA
GTTGTTCCAACACATTCCCTTCCTGAACAAACATTTTGGGCACCGTGGAT
CAAATCCTGAAGGAGTGAGAACTACAAGCTATCGGTGCCCACTTATGGCG
CTATTCTGGTGTCCGAGGATCACAATCACTGCTTGCTAGTGCAGTCCTAC
TTCGCGCGCAACTTCTGGGGAATTCCCAAGGGCAAGATCAATGAAAACGA
AAACCCAGCCATTGGGCCAACGAGGAAAGTTATGAAGAAACTGTTCGAAT
TCACAGGAACTAATCAATGCTAGGACTA
FMO12062.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP2-RE | 5934 | CG6169-RE | 845..1959 | 9..1120 | 5130 | 97.7 | Plus |
| DCP2-RA | 3665 | CG6169-RA | 845..1959 | 9..1120 | 5130 | 97.7 | Plus |
| DCP2-RB | 2850 | CG6169-RB | 137..1144 | 116..1120 | 4595 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15823247..15823990 | 860..117 | 3720 | 100 | Minus |
| 3L | 28110227 | 3L | 15822981..15823185 | 1060..857 | 810 | 95.1 | Minus |
| 3L | 28110227 | 3L | 15825471..15825579 | 117..9 | 545 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsub\SGM | 823 | Dsub\SGM SGM 823bp Derived from AF043638. | 580..638 | 41..98 | 130 | 71.2 | Plus |
FMO12062.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:52 Download gff for
FMO12062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp2-RE | 842..1912 | 9..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:45 Download gff for
FMO12062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp2-RA | 845..1915 | 9..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:39 Download gff for
FMO12062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DCP2-RA | 845..1915 | 9..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:39 Download gff for
FMO12062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15822963..15823181 | 861..1079 | 93 | <- | Minus |
| 3L | 15823247..15823989 | 118..860 | 100 | <- | Minus |
| 3L | 15825471..15825579 | 9..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:45 Download gff for
FMO12062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15816063..15816281 | 861..1079 | 93 | <- | Minus |
| arm_3L | 15816347..15817089 | 118..860 | 100 | <- | Minus |
| arm_3L | 15818571..15818679 | 9..117 | 100 | | Minus |
