FMO12063.5prime Sequence
1135 bp (1039 high quality bases) assembled on 2012-06-25
> FMO12063.5prime
CAGTCGACATGAACATCCCCATCTACCAAGTGCCCTCGGTGACCATGCAG
TCGCTGCACCAGCAATCTTTGTACCAGCAAACCTATTTGGATCGCAATCG
CATGGTCACCGATGTATTTGTGCAGGAACACGTCTCGCAGAGCTCTTGGT
CAATGGCCGGTTCATCGGCTGTTTTTATACCAGGCCCCATTATAACTGGT
AGTGCCCATGGACACTGCCATCATACCGCGACAGTTTCGACTGTAAGTCC
TCAATTAGCGACCTTTATGCCTTTTCCGGGCATGCAGTACTATGCGGCAA
GCTCAGCCACGATGAACGCCTATGGCCATAATCAGATGTATTCTACTCGT
GCTTCGGCCTCCGTCGGCTTCTATTTGCCACAGTACCATGCAAGCTGCAG
TCATGAACAGCCGAAAAAGACGTTCTGTGCGGCTCAAACGCAGACCCAGC
AGACGGCTAAGACCAGTTGCGATGTGGGCACCCAGGTGGATTTGGATGCT
GAAGAATTGCGCTCGGAGGCTAGGAAGCCAAGACCAGAAAGTGTTGTTCC
TGAAGAATCGAGCATTAGTTCATTGGAAAGCGGCGCAGGCGATGGTTTCC
GAGTGCAAAAAAAGCTGCGCAACTCGGAGGTAAAGCTGCTGGACCAGCGT
CTCCATGATATTACCAGAGTTTCACTTCATGGCAGTGAGATAGCCGAACG
TCTGGCCAATGCCCATCGCAATCGTCCGTGCTTCAAGAAGATCGATACAC
TGTGCGCCCGCCTGAAGCAGATCTGCTGCGTCCGGATGGCGTGCTGCCAA
ATATAAACTCACAGGGCATTGCTTGGGCCGTTAAGGATTTCATATTCGTC
TTTACGCGCATTGTGAATGCCTGGGTCATACTGAAGGGCTACGTGTATAA
TACTCCCGATGCTTTGAACAAGATTAAAGATGAGCTGCCGTCGGGCTTTT
TGGCTTCCTTTGATTCTTGGCAGCTCTCAACCCTGTCCATCGTAAAGATG
ATTGTTAATCCTTTGTAATTCTGGATGAGCTGCTGCAGAAGCAGAGAACA
GCCTTTCCGAAAGAATGGGCTCCATTTACCAAGCAATAGCACTCTCTCTT
AGAAGTTTATATGATTGCACCGATAGGCATGACTT
FMO12063.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtsh-RC | 2528 | CG7795-RC | 232..1356 | 8..1126 | 5230 | 98.1 | Plus |
| mtsh-RD | 2501 | CG7795-RD | 232..1356 | 8..1126 | 5230 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8318439..8318961 | 1059..540 | 2390 | 98.5 | Minus |
| 2L | 23513712 | 2L | 8319379..8319677 | 306..8 | 1495 | 100 | Minus |
| 2L | 23513712 | 2L | 8319076..8319312 | 541..305 | 1185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:21:44 has no hits.
FMO12063.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:52 Download gff for
FMO12063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtsh-RC | 212..1283 | 1..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:47 Download gff for
FMO12063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtsh-RD | 226..1297 | 1..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:41 Download gff for
FMO12063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtsh-RD | 226..1297 | 1..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:41 Download gff for
FMO12063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8318428..8318959 | 542..1069 | 97 | <- | Minus |
| 2L | 8319076..8319310 | 307..541 | 100 | <- | Minus |
| 2L | 8319379..8319683 | 1..306 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:47 Download gff for
FMO12063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8319379..8319683 | 1..306 | 99 | | Minus |
| arm_2L | 8318428..8318959 | 542..1069 | 97 | <- | Minus |
| arm_2L | 8319076..8319310 | 307..541 | 100 | <- | Minus |
