FMO12066.5prime Sequence
1163 bp (1047 high quality bases) assembled on 2012-06-25
> FMO12066.5prime
CAGTCGACATGGCCGGTAATGGAGAGGCGTCTTGGTGCTTCTCACAGATT
AAAGGCGCCCTAGACGATGATGTCACGGATGCAGACATCATATCCTGCGT
GGAATTCAATCACGATGGCGAGCTGCTGGCCACTGGTGACAAGGGCGGTC
GCGTCGTCATCTTTCAGCGTGATCCTGCCTCAAAAGCCGCCAATCCGCGA
CGCGGCGAATACAATGTCTATTCGACATTCCAATCGCACGAGCCCGAATT
CGACTACCTCAAGTCCCTGGAGATTGAGGAGAAGATAAACAAGATCCGGT
GGCTGCAACAAAAGAATCCCGTGCACTTTCTGCTCTCGACCAACGACAAG
ACAGTCAAATTGTGGAAGGTCAGTGAGCGTGACAAGTCGTTCGGCGGCTA
CAACACGAAGGAGGAGAACGGACTGATCCGGGATCCACAGAATGTAACGG
CCCTCCGAGTGCCATCCGTGAAGCAGATACCACTGCTGGTGGAGGCCTCC
CCACGGCGCACCTTCGCCAATGCACACACCTATCACATCAATTCAATAAG
CGTTAATTCGGATCAGGAGACCTTCTTGTCGGCCGACGACCTGCGGATCA
ATCTGTGGCACTTGGAGGTGGTCAACCAGAGCTACAACATTGTCGACATC
AAGCCAACCAACATGGAGGAGCTAACAGAGGTGATCACCGCGGCCGAATT
CCATCCGACCGAGTGCAATGTGTTTGTCTACTCGAGCTCTAAGGGCACAA
TACGATTATGTGATATGCGTTCGGCGGCGCTATGCGACCGGCACAGCAAA
CAGTTCGAGGAGCCCGAGAATCCAACGAATCGCAGCTTTTTCAGCGAAAT
AATCAGCTCCATCAGCGATGTGAAGCTAAGCAACTCGGGTCGCTACATGA
TCTCCAGGGATTACTTGAGCATCAAAGTGGTGGGATCTGCATATGGAAAC
AAAGCCCATTGAGACTTATCCGGTTCATGAATACCTGCCCCGCCAAGCTG
TGGCCTCGCTGTTACGAAAATGACTGCATCTTCGACCAGTTCGAGTTGCT
GTGAAACGGCCAGGACAGCTCAATAAATGACCGGAAGCTACAACCAAACT
TCTTTCCGCGTCTTCGATTGGCAAACTCGTAAAGAGAATGTGACCCTAGA
GGGCGCTCTCAAG
FMO12066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tws-RH | 2300 | CG6235-RH | 464..1597 | 7..1152 | 5240 | 97.8 | Plus |
| tws-RG | 2400 | CG6235-RG | 571..1704 | 7..1152 | 5240 | 97.8 | Plus |
| tws-RC | 2242 | CG6235-RC | 406..1539 | 7..1152 | 5240 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10128627..10129436 | 975..165 | 3975 | 99.6 | Minus |
| 3R | 32079331 | 3R | 10129495..10129647 | 167..15 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 10128378..10128516 | 1118..972 | 255 | 87.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:21:47 has no hits.
FMO12066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:53 Download gff for
FMO12066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RE | 481..1605 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:48 Download gff for
FMO12066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RC | 399..1523 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:43 Download gff for
FMO12066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RC | 399..1523 | 1..1136 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:43 Download gff for
FMO12066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10128630..10129433 | 168..972 | 99 | <- | Minus |
| 3R | 10129495..10129647 | 15..167 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:48 Download gff for
FMO12066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5954352..5955155 | 168..972 | 99 | <- | Minus |
| arm_3R | 5955217..5955369 | 15..167 | 100 | | Minus |
