FMO12068.5prime Sequence
1119 bp (1024 high quality bases) assembled on 2012-06-25
> FMO12068.5prime
CAGTCGACATGAAGCACTCGCCGCTGATTGCCAGCGCTTGTCTGGCGCTG
GTGTTGATGTCATCCAGCCTGATTGGCAGCACCGAGGCCAGAAACAAGAA
GAAGTACGTCGGCGAGACGGGCGGCGATTTCGAGTTTATCGATGAGATAA
ACAAAAACACGCAGAGCAACAAGAATCTGGGCGAGCACAAGCGCTGGATA
CACGATCCCTCGAGTGACCTTTGCCGACCGCTGAACTGCAAGAAGCGTGA
AATCTGCCTGCTGGAGGACGAGTTCAGTGCCGTTTGCGTGTCGAAGAAGG
AGCTCCACAAGAATCGTGATGAGATAATCACCAAGGCCAAGTATTTGGAG
GAGGAGGCCAAGCGGCGTGTCAACCAGCAGGACAATCAGGACAGCCAGGA
CGCGGAGGATATCAACAACGACGACGAGGATAACAGCAGCGATGGCGGCA
GCAGCAACTCCAGCCCCACAGGCACCAACAATGCCCAGGCCAGTGTCCAG
GGAAATGAGGAGACCGACGACGAAGATAAGAGCCTAAGTCTGGGCGACGA
CGACGAGTCCAAGGAGGATGATGTCTTCTACGAGAACAGTATCGCCGCCG
GCGATAAGCAGCAGCAGCAACAGCAGCTATCCCAGCCTGCTGCAGGACCT
TCCGTTATTCAGCAGGACGACGACGAGGAGTTGGACAACTGCAAGCCGTG
TCCTGTGGCCAAGCCGACGTTCCTGTGCGGAGCCGACAACAGGACCTACT
CATCACTATGCAGATTGGATTATCACAATTGCATACATTCGACGTCCATA
CGGATCGCCTGCAAAGGATTCTGTCCCTGCAAGGAGATTGTCGATGGAAA
GCGGCTGCAGCGCATCTCGGGCTACATAACAAGTACAACAAGAAGATCAG
CCTGACCAGCAGCAGCAGCAGCAGCAACACAACAACAGCAGCAGCAGCAG
TGAGCAGGCCTACAGGACAGCAACAACAACAACATCATGATGAACAGCCG
CACATATGGGGCGGCAACACTACGACTTCACACGATCATGATTGACAAGA
GACATTACCGGCCAAACAACTCATCAATGCCAGAACCTTCAGCCGAGGAG
AATCAAAATTGACATACAG
FMO12068.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13830-RE | 2460 | CG13830-RE | 380..1469 | 3..1081 | 4965 | 97.8 | Plus |
CG13830-RD | 4382 | CG13830-RD | 380..1469 | 3..1081 | 4965 | 97.8 | Plus |
CG13830-RC | 2451 | CG13830-RC | 380..1469 | 3..1081 | 4965 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23081349..23081718 | 685..316 | 1850 | 100 | Minus |
3R | 32079331 | 3R | 23076828..23076976 | 834..686 | 745 | 100 | Minus |
3R | 32079331 | 3R | 23112203..23112345 | 150..8 | 700 | 99.3 | Minus |
3R | 32079331 | 3R | 23076002..23076215 | 1041..834 | 585 | 93.5 | Minus |
3R | 32079331 | 3R | 23081828..23081930 | 316..214 | 515 | 100 | Minus |
3R | 32079331 | 3R | 23082095..23082167 | 217..145 | 365 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:21:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2871 | 871..998 | 226 | 69.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6882 | 373..480 | 155 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2573..2850 | 384..649 | 154 | 56 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2467..2547 | 411..488 | 137 | 65.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6831 | 373..480 | 135 | 61.6 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 991..1058 | 607..674 | 133 | 66.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6959 | 373..500 | 129 | 56.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2525 | 373..562 | 122 | 53.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6768 | 430..480 | 120 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6789 | 409..480 | 117 | 62.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6810 | 411..480 | 116 | 62.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6844 | 373..481 | 115 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6881 | 373..497 | 115 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2373 | 585..627 | 113 | 76.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1584 | 578..636 | 111 | 67.2 | Plus |
FMO12068.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:53 Download gff for
FMO12068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13830-RD | 364..1438 | 1..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:51 Download gff for
FMO12068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13830-RC | 379..1453 | 1..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:44 Download gff for
FMO12068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13830-RC | 379..1453 | 1..1065 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:44 Download gff for
FMO12068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23081828..23081930 | 214..316 | 100 | <- | Minus |
3R | 23082099..23082165 | 147..213 | 100 | <- | Minus |
3R | 23112207..23112352 | 1..146 | 98 | | Minus |
3R | 23076048..23076214 | 835..998 | 95 | <- | Minus |
3R | 23076828..23076976 | 686..834 | 100 | <- | Minus |
3R | 23081349..23081717 | 317..685 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:51 Download gff for
FMO12068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18901770..18901936 | 835..998 | 95 | <- | Minus |
arm_3R | 18902550..18902698 | 686..834 | 100 | <- | Minus |
arm_3R | 18907071..18907439 | 317..685 | 100 | <- | Minus |
arm_3R | 18907550..18907652 | 214..316 | 100 | <- | Minus |
arm_3R | 18907821..18907887 | 147..213 | 100 | <- | Minus |
arm_3R | 18937929..18938074 | 1..146 | 98 | | Minus |