Clone FMO12068 Report

Search the DGRC for FMO12068

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:68
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13830-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12068.5prime Sequence

1119 bp (1024 high quality bases) assembled on 2012-06-25

> FMO12068.5prime
CAGTCGACATGAAGCACTCGCCGCTGATTGCCAGCGCTTGTCTGGCGCTG
GTGTTGATGTCATCCAGCCTGATTGGCAGCACCGAGGCCAGAAACAAGAA
GAAGTACGTCGGCGAGACGGGCGGCGATTTCGAGTTTATCGATGAGATAA
ACAAAAACACGCAGAGCAACAAGAATCTGGGCGAGCACAAGCGCTGGATA
CACGATCCCTCGAGTGACCTTTGCCGACCGCTGAACTGCAAGAAGCGTGA
AATCTGCCTGCTGGAGGACGAGTTCAGTGCCGTTTGCGTGTCGAAGAAGG
AGCTCCACAAGAATCGTGATGAGATAATCACCAAGGCCAAGTATTTGGAG
GAGGAGGCCAAGCGGCGTGTCAACCAGCAGGACAATCAGGACAGCCAGGA
CGCGGAGGATATCAACAACGACGACGAGGATAACAGCAGCGATGGCGGCA
GCAGCAACTCCAGCCCCACAGGCACCAACAATGCCCAGGCCAGTGTCCAG
GGAAATGAGGAGACCGACGACGAAGATAAGAGCCTAAGTCTGGGCGACGA
CGACGAGTCCAAGGAGGATGATGTCTTCTACGAGAACAGTATCGCCGCCG
GCGATAAGCAGCAGCAGCAACAGCAGCTATCCCAGCCTGCTGCAGGACCT
TCCGTTATTCAGCAGGACGACGACGAGGAGTTGGACAACTGCAAGCCGTG
TCCTGTGGCCAAGCCGACGTTCCTGTGCGGAGCCGACAACAGGACCTACT
CATCACTATGCAGATTGGATTATCACAATTGCATACATTCGACGTCCATA
CGGATCGCCTGCAAAGGATTCTGTCCCTGCAAGGAGATTGTCGATGGAAA
GCGGCTGCAGCGCATCTCGGGCTACATAACAAGTACAACAAGAAGATCAG
CCTGACCAGCAGCAGCAGCAGCAGCAACACAACAACAGCAGCAGCAGCAG
TGAGCAGGCCTACAGGACAGCAACAACAACAACATCATGATGAACAGCCG
CACATATGGGGCGGCAACACTACGACTTCACACGATCATGATTGACAAGA
GACATTACCGGCCAAACAACTCATCAATGCCAGAACCTTCAGCCGAGGAG
AATCAAAATTGACATACAG

FMO12068.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13830-RE 2460 CG13830-RE 380..1469 3..1081 4965 97.8 Plus
CG13830-RD 4382 CG13830-RD 380..1469 3..1081 4965 97.8 Plus
CG13830-RC 2451 CG13830-RC 380..1469 3..1081 4965 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23081349..23081718 685..316 1850 100 Minus
3R 32079331 3R 23076828..23076976 834..686 745 100 Minus
3R 32079331 3R 23112203..23112345 150..8 700 99.3 Minus
3R 32079331 3R 23076002..23076215 1041..834 585 93.5 Minus
3R 32079331 3R 23081828..23081930 316..214 515 100 Minus
3R 32079331 3R 23082095..23082167 217..145 365 100 Minus
Blast to na_te.dros performed 2014-11-28 03:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2871 871..998 226 69.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6882 373..480 155 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2573..2850 384..649 154 56 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2467..2547 411..488 137 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6831 373..480 135 61.6 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 991..1058 607..674 133 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6959 373..500 129 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2525 373..562 122 53.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6768 430..480 120 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6789 409..480 117 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6810 411..480 116 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6844 373..481 115 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6881 373..497 115 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2373 585..627 113 76.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1521..1584 578..636 111 67.2 Plus

FMO12068.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:53 Download gff for FMO12068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13830-RD 364..1438 1..1065 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:51 Download gff for FMO12068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13830-RC 379..1453 1..1065 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:44 Download gff for FMO12068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13830-RC 379..1453 1..1065 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:44 Download gff for FMO12068.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23081828..23081930 214..316 100 <- Minus
3R 23082099..23082165 147..213 100 <- Minus
3R 23112207..23112352 1..146 98   Minus
3R 23076048..23076214 835..998 95 <- Minus
3R 23076828..23076976 686..834 100 <- Minus
3R 23081349..23081717 317..685 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:51 Download gff for FMO12068.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18901770..18901936 835..998 95 <- Minus
arm_3R 18902550..18902698 686..834 100 <- Minus
arm_3R 18907071..18907439 317..685 100 <- Minus
arm_3R 18907550..18907652 214..316 100 <- Minus
arm_3R 18907821..18907887 147..213 100 <- Minus
arm_3R 18937929..18938074 1..146 98   Minus