Clone FMO12069 Report

Search the DGRC for FMO12069

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:69
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5793-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12069.5prime Sequence

686 bp (686 high quality bases) assembled on 2012-06-25

> FMO12069.5prime
CAGTCGACATGGCGTGCCAAAACCAAAATGCCGCCAACTTCTTGAGCAAT
GGCAAGAAAATTGTGGGGGTGGCTCTTAATTACATGGACGTTGTGCTGGC
CAGGAACGTTCCCGTGCCCAAGGAGCCGCTCGTCTTCCTCAAGCCCACAT
CTTCGTACCTCCAGGAGGGTCAGCCCATTGTGTTACCAAAAGTCTTTACC
AAGGTGGCATATGAAGTGGAACTAGGCGTGGTGATTGGAAAGCCCTGCAA
GAACGTATCCAAGGCAGATGCCATGAGCTATGTGGCAGGATACTGCCTGG
CTTTGGATCTAACTGCCCAGTGCAATTTGGGACCAGCTCGGGCGGCCGGT
CATCCGTGGACCTTGGGCAAGGGATTTGATACTTCTACGCCCGTGTCCCA
GTTTATACCCATCGAAAAAGTGACGGACCCGCACAACTTGCCGCTTTGGC
TCACCGTCAATGGAGACCTTAAGCAAAACGGGTGCACTGCAGACTTAATA
TTCAAGGTGCCCGACATCATTTCCTACGTGTCCAAGTACATGACCCTGGA
GGCCAACGATCTGATCCTTACCGGAACGCCCAATGGTGCCGATGCGTTCA
AGGCAGGCGATGTAATTCAGTGTGGAATGGCCGATCTCGCTAAATTGACC
TTCCAAGTGGAGGCTGAAGCAAGCTTTCTAGACCAT

FMO12069.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5793-RB 731 CG5793-RB 56..715 9..668 3285 99.8 Plus
CG5793-RE 1601 CG5793-RE 231..890 9..668 3285 99.8 Plus
CG5793-RD 788 CG5793-RD 113..772 9..668 3285 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21128551..21128890 329..668 1700 100 Plus
3R 32079331 3R 21128346..21128494 182..330 745 100 Plus
3R 32079331 3R 21128121..21128217 86..182 485 100 Plus
3R 32079331 3R 21127978..21128055 9..86 375 98.7 Plus
Blast to na_te.dros performed on 2014-11-28 03:15:02 has no hits.

FMO12069.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:55 Download gff for FMO12069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5793-RB 52..718 1..672 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:44 Download gff for FMO12069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5793-RD 109..775 1..672 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:22 Download gff for FMO12069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5793-RD 109..775 1..672 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:22 Download gff for FMO12069.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21128121..21128217 86..182 100 -> Plus
3R 21128347..21128493 183..329 100 -> Plus
3R 21127974..21128054 1..85 94 -> Plus
3R 21128552..21128893 330..672 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:44 Download gff for FMO12069.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16953696..16953776 1..85 94 -> Plus
arm_3R 16953843..16953939 86..182 100 -> Plus
arm_3R 16954069..16954215 183..329 100 -> Plus
arm_3R 16954274..16954615 330..672 99   Plus