Clone FMO12071 Report

Search the DGRC for FMO12071

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:71
Vector:pMK33-CFH-BD
Associated Gene/Transcriptbeat-IIIa-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12071.5prime Sequence

836 bp (836 high quality bases) assembled on 2012-06-25

> FMO12071.5prime
CAGTCGACATGACCGAGGTGAAGATACCCAATCACATAATGCGCCTGAAG
AGCGCCACTCTGGGCTGCCGTTACGCCCTCGACGGGGAGTCCTTGTACTC
GGTGAAGTGGTATAAGGACGGGCACGAGATCTACCGCTATGTGCCACGCG
ATAAGCCCCCCGGACAGTCCTTCCCCCTGCCCGGAGTCAACATCGATCTG
CGTAACTCCTCGGACACCCAGATTCTCCTGCGCCGCGTTACCCTCCAGAG
TTCCGGACTTTATCGGTGCGAGGTGTCCGGCGAGGCGCCCGCATTCAACA
CCGTATCCGAGTCGGAGACCATGACCGTTGTGGTGACCCCCAACCACGGA
CCGAAAATAACAGGTGGCCAGCCGCGCTACCAAATTGGAGACATCGTTCG
GGTTAACTGCACCTCATCGCCGTCCAAGCCCGTCTGTCACCTCAGTTGGC
TAATAAATGGGGAACCGGTGCAAAAGACACACCTTCGGCAATACGACAAG
GTGGTGGTGAATCGAGATGGGTTGGAGATGGCTCGCTTGGGGCTGGAGTT
CCGGGTGAGGTCCTTCCACTTTAAGCACGGCGACATGAAGTTAAAGTGCG
TGGCCAAGATCAGCTCACTGTATCTGCAAAGCAACGAGGAGAGTGTGGAA
AGCGATCGCCAGCATCGGGCCCCGGCATTGGAATCTCGGGAGACGGTAGC
AGCCAAGTCCAGCACGATTGCTGCCGCCTGTTCAAAACTGCCATCAAGCC
TGATTGTCTCACTGCCTCCTGTTCTCCTGCTGCTGCTGTTTCAAAATTGG
AACTGGCCACGAAATAGTGCAAGCTTTCTAGACCAT

FMO12071.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIIa-RE 4457 CG12621-RE 956..1765 9..818 4050 100 Plus
beat-IIIa-RD 1457 CG12621-RD 557..1366 9..818 4050 100 Plus
CG34106-RB 4457 CG34106-RB 956..1765 9..818 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17169813..17170076 333..596 1320 100 Plus
2L 23513712 2L 17158562..17158750 9..197 945 100 Plus
2L 23513712 2L 17161861..17161996 198..333 680 100 Plus
2L 23513712 2L 17170135..17170260 595..720 630 100 Plus
2L 23513712 2L 17170328..17170426 720..818 495 100 Plus
2L 23513712 2L 16990240..16990368 333..461 210 77.5 Plus
Blast to na_te.dros performed on 2014-11-28 03:21:37 has no hits.

FMO12071.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:51 Download gff for FMO12071.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-IIIa-RD 212..1039 1..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:44 Download gff for FMO12071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34106-RB 948..1775 1..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:37 Download gff for FMO12071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34106-RB 948..1775 1..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:37 Download gff for FMO12071.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17158554..17158750 1..197 97 -> Plus
2L 17161861..17161996 198..333 100 -> Plus
2L 17169814..17170076 334..596 100 -> Plus
2L 17170137..17170260 597..720 100 -> Plus
2L 17170329..17170424 721..816 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:44 Download gff for FMO12071.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17158554..17158750 1..197 97 -> Plus
arm_2L 17161861..17161996 198..333 100 -> Plus
arm_2L 17169814..17170076 334..596 100 -> Plus
arm_2L 17170137..17170260 597..720 100 -> Plus
arm_2L 17170329..17170424 721..816 100 -> Plus