Clone FMO12072 Report

Search the DGRC for FMO12072

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:72
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11041-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12072.5prime Sequence

491 bp (491 high quality bases) assembled on 2012-06-25

> FMO12072.5prime
CAGTCGACATGGATATGGATTTGAATAACGACTTGGAGAAACGCATTTCG
GATGCCTTTTGTGTGTTCGATCATCATGGCGACAAGTTCATCGACGTTAG
AGAAGTGGGCACTGTGCTGAGACTCCTGGGCTGTGTTCCCACCGAGGAGG
AGGTGAACGAAGTAATTTCGGCTACAGAATCGGAGGAGACCAGTGGCGAA
GTGCATTTGACTAAATTTTTGCCACACGTCTCGCAACTGCTCATGGAAAG
AAAAATGGAGCCTGCTCCGCCAGAGAAAATTCTCCAGGCCTTTAAGATCT
TGGATCCGGAGAACAAGGGCTATCTCACCAAGGAGAGCTTTGGCAAACTG
ATGATGGAGGAGGGCGAGCCTTTCACCCAAGAGGAAATGGACGAAATGTG
GCCAGTGGCCATAGACCCAATTAGCGGACACATACCCTATGAGTTCTACC
TGAATCAGCTCATGGTCTATCTGGCAAGCTTTCTAGACCAT

FMO12072.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11041-RB 537 CG11041-RB 28..494 7..473 2335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20146214..20146445 22..253 1160 100 Plus
2R 25286936 2R 20146501..20146713 254..466 1065 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:14:49 has no hits.

FMO12072.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:49 Download gff for FMO12072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11041-RB 7..483 1..478 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:35 Download gff for FMO12072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11041-RB 22..498 1..478 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:15 Download gff for FMO12072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11041-RB 22..498 1..478 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:15 Download gff for FMO12072.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20146214..20146445 22..253 100 -> Plus
2R 20146501..20146716 254..470 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:35 Download gff for FMO12072.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16033719..16033950 22..253 100 -> Plus
arm_2R 16034006..16034221 254..470 99   Plus