FMO12073.5prime Sequence
1107 bp (1010 high quality bases) assembled on 2012-06-25
> FMO12073.5prime
CAGTCGACATGCGCCCGCCGCAGCAACTGCTCGTGTTGCTGCTTGCAACA
GTGGCCGCAGCTGGCCACAGCAGCTACAATTCGGTTTACAACGAGGTGAT
CCCGCCGAAGCTGAAGCAGGCCATCGACCAGGAGCTGCCCAAGGAGGCCA
AGTTCTTCGATGAGCTGGACTTGATACCGCAGTCGTGCCGCTTTCGTGGC
CACAAGTTCGAGTGCGGCCTGTCCATCTCCTGTGTCTTGGGCGGCGGCAA
GCCGCTGGATCTTTGCTCTGGCGGCATGATCTGGTCTTGTTGCGTGGACA
AAGATCTCGACGCCGAGGAGAGTCCGCACGCCGCCCCGGTGAACAACACG
AGCTGCGGCGAGGTCTACACCCGATCCAATCGCATTGTAGGAGGACATTC
CACGGGCTTTGGCTCTCATCCCTGGCAGGTGGCGCTGATCAAAAGTGGGT
TCCTCACTAGGAAACTCAGCTGCGGCGGTGCACTGATCTCCAATCGATGG
GTGATAACGGCTGCCCATTGTGTGGCTTCCACTCCAAACTCCAATATGAA
AATCCGATTGGGCGAGTGGGATGTTCGTGGTCAGGAGGAGCGCCTAAACC
ACGAAGAGTATGGCATCGAGCGAAAGGAAGTGCATCCCCATTACAATCCG
GCAGACTTTGTAAATGACGTGGCTCTGATCCGCTTGGACAGGAATGTGGT
CTACAAGCAGCACATCATACCCGTCTGTCTGCCTCCTTCCACCACCAAAT
TGACTGGTAAAATGGCCACTGTGGCTGGGTGGGGGCGAACCCGACACGGC
CAGAGCACAGTTCCCTCCGTACTGCAGGAGGTGGACGTGGAGGTGATCTC
GAATGATCGCTGTCAGCGATGGTTTCCGGGCAGCGGGTCGCCGAGAGGCC
ATCCACGATGTCTTCTTGTGCGCAAGCTACAGGATGGCGGCCGGGATTCG
TGTCAGGGCGACAGTGGTGTCACTAACATTGACCATGACGTCGCAAGACC
TGATCGGAATGTGTCCTGGGCATTGGCCTGTGGGAGGAACACTTGCCGGC
GTCCATACGACATCAGCGTTCTGCCTGTATCACAGGTATGCCAAGGACAA
CGCGGCA
FMO12073.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8172-RD | 1798 | CG8172-RD | 346..1417 | 9..1070 | 4960 | 98.3 | Plus |
| CG8172-RG | 1906 | CG8172-RG | 797..1525 | 352..1070 | 3245 | 97.5 | Plus |
| CG8172-RF | 2364 | CG8172-RF | 1255..1983 | 352..1070 | 3245 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9007869..9008249 | 911..530 | 1860 | 99.7 | Minus |
| 2R | 25286936 | 2R | 9011236..9011416 | 352..172 | 905 | 100 | Minus |
| 2R | 25286936 | 2R | 9008318..9008495 | 529..352 | 890 | 100 | Minus |
| 2R | 25286936 | 2R | 9013019..9013181 | 171..9 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 9007706..9007786 | 987..910 | 260 | 93.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:22:00 has no hits.
FMO12073.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:55 Download gff for
FMO12073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8172-RD | 328..1406 | 9..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:54 Download gff for
FMO12073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8172-RD | 346..1424 | 9..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:49 Download gff for
FMO12073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8172-RD | 346..1424 | 9..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:49 Download gff for
FMO12073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9013019..9013181 | 9..171 | 100 | | Minus |
| 2R | 9007871..9008249 | 530..909 | 99 | <- | Minus |
| 2R | 9008318..9008495 | 352..529 | 100 | <- | Minus |
| 2R | 9011237..9011416 | 172..351 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:54 Download gff for
FMO12073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4900524..4900686 | 9..171 | 100 | | Minus |
| arm_2R | 4895376..4895754 | 530..909 | 99 | <- | Minus |
| arm_2R | 4895823..4896000 | 352..529 | 100 | <- | Minus |
| arm_2R | 4898742..4898921 | 172..351 | 100 | <- | Minus |
