FMO12074.5prime Sequence
1117 bp (1001 high quality bases) assembled on 2012-06-25
> FMO12074.5prime
CAGTCGACATGCGCCCGGAGTTCATAGCTGAACGGAAGCAAGCCCTGCAA
GAGTACATAAACGCCGTACTAATGAATCCCATATTGGCATCCTCGCTGCC
AGCCAAGCGCTTTGTGGATCCCGAGAGTTACTCGCAGTCCTTTCACGACC
ATGCCGTGCAGAATGCTATGCTCTGCCTGCGCAACGACACTACGTGGTCG
CTGGGTGGAAGTATGGGTGCCATAGGCTGGCGCCTCCGGAAGCACTACTT
TAAGGTCACTACAAAGCCGCCGGAGAAGAGCAGCAACAAGCAACTGGTTA
AGAGCGGTTCACAGACCCATCAGAGCAAACATTTCGCCGCTGGGAGCAGC
AATGGCAGCGGTCACTCCATCGACGCCGGAACCTTGGATCCCGGGTCAGA
GGTGGTGGCTGAGTGGCTGGAGTACGGACCCGACAAGTTTATCGACGAAA
AAGAAATCGGGGGCATAATGAAAAGCCTGATGGGCCTGCAGCATCCGCAC
ATCGAGCCCGTTCTCCTGGCAGCCCACACCGAAAACGGTTGCCTGGTCAT
AAGAAAATTCCACAAGCATGGTACTTTAAAGGATGTTTTGTGCATGGCCG
CGAATCCAAAGAATACATTTCTTAGCAAGTACGGCAATCCCAAGGGGCGC
ACTGCGCTTTCAATGAAACAAGTGGCTACATATGGGAAGCAGATTCTAGA
GGCCCTAATATTTTTGCACTCGAAGGGATACGCATATGGTCACCTACATT
CCGGAAACATAGTGATAGTCGACGATTGTGTTAAGCTACTCGACATCGAG
AACTTTTTGCTGGGCGTTCCAGCGTTTTACCGGCCATTTTTCATGCAGCA
CAGTAAAATCCATGCCATCGAGACCATTGATGTTTACTGTTTTGGTCATG
TCCTCTTCAAAATGGCATGGGTTATCCTCTGCAGAGTCTGTCGTGCGCAG
ATCACCGAATGTCCGAACGCTGAAATGTCCTTCTGGGAGAGCATTTCTTC
CAAGGAAGCTTGCAAGCTGGCTTGCGACTCTTGAGCATTTGGTTGCTCAC
AGATTCTTTCTTGCAATACGCTCACGAGAAGGTGCGGCGCGCTTGCAATG
TCTGAATGCCAGTCACT
FMO12074.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8726-RC | 3470 | CG8726-RC | 548..1617 | 7..1072 | 4950 | 98 | Plus |
| CG8726-RB | 3336 | CG8726-RB | 513..1582 | 7..1072 | 4950 | 98 | Plus |
| CG8726-RA | 3371 | CG8726-RA | 548..1617 | 7..1072 | 4950 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7970774..7971183 | 556..147 | 2050 | 100 | Minus |
| 2R | 25286936 | 2R | 7970246..7970475 | 964..738 | 955 | 97.4 | Minus |
| 2R | 25286936 | 2R | 7970530..7970713 | 740..557 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 7971244..7971384 | 147..7 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:15:12 has no hits.
FMO12074.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:59 Download gff for
FMO12074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8726-RC | 589..1673 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:52 Download gff for
FMO12074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8726-RA | 543..1627 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:27 Download gff for
FMO12074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8726-RA | 543..1627 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:27 Download gff for
FMO12074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7970235..7970474 | 739..973 | 96 | <- | Minus |
| 2R | 7970532..7970713 | 557..738 | 100 | <- | Minus |
| 2R | 7970774..7971182 | 148..556 | 100 | <- | Minus |
| 2R | 7971244..7971387 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:52 Download gff for
FMO12074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3857740..3857979 | 739..973 | 96 | <- | Minus |
| arm_2R | 3858037..3858218 | 557..738 | 100 | <- | Minus |
| arm_2R | 3858279..3858687 | 148..556 | 100 | <- | Minus |
| arm_2R | 3858749..3858892 | 1..147 | 97 | | Minus |
