Clone FMO12075 Report

Search the DGRC for FMO12075

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:75
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG16970-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12075.5prime Sequence

479 bp (479 high quality bases) assembled on 2012-06-25

> FMO12075.5prime
CAGTCGACATGATGGTTAGCAAATTGTGGAACAGCTGCTTCCCGGAGTTC
ACCCCGGACCATGTGCATCGACACAACTTTTACCTATGCCAGTGGCAACG
GAACACGCAGGTGCGCATCGTTTACCTGTTCTACCGATGGATAACGGCCA
TCACCTGCCTGGCGGCACTGGTCTGCTCCTTGCTGGACATTGGGCGCACG
GACGAGCACTTTGAGCACCACTATGCCAAGTGGTGGATCTACCTGACCCA
CTGGGGACTGCTCTTCTGCACAGTCCAGGCCTGGCTGGCCGCCTGGATAG
TGACCCAGGGCATGATGGTGGAGCGCGAGGACTTCGAGATTGTGCGGCAG
GCGAAGAAGAGCCGCCTGCACCACTTGTACTGGGTGCTCTACACCTGTGC
CACTGTCTATGCGTTCATCGTCACCATGTGCTATTGGCTACTGGTCCACA
ATCCCGGTAAGGCAAGCTTTCTAGACCAT

FMO12075.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG43778-RC 2595 CG43778-RC 2027..2479 9..461 2265 100 Plus
CG43778-RA 6433 CG43778-RA 2027..2474 9..456 2240 100 Plus
CG43778-RD 6433 CG43778-RD 2027..2474 9..456 2240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13307930..13308300 461..91 1855 100 Minus
2L 23513712 2L 13308410..13308493 92..9 420 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:15:16 has no hits.

FMO12075.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:59 Download gff for FMO12075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16970-RB 2000..2462 1..465 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:54 Download gff for FMO12075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43778-RC 2021..2483 1..465 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:28 Download gff for FMO12075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43778-RC 2021..2483 1..465 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:28 Download gff for FMO12075.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13307926..13308298 93..465 99 <- Minus
2L 13308410..13308499 1..92 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:54 Download gff for FMO12075.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13307926..13308298 93..465 99 <- Minus
arm_2L 13308410..13308499 1..92 96   Minus