FMO12076.5prime Sequence
921 bp (918 high quality bases) assembled on 2012-06-25
> FMO12076.5prime
CAGTCGACATGAAGCGGGGCAAGAAGCAATGGGGCACCAGGGAAAGATCA
GGCATGAGCTTCCTTATCGTCATCACCTTCTTCGCCGTCTTTGGACTAAT
CATTCTAACTGAGGTCTTCATGATCGACGAGCGCACCCACAGCGGCATGT
TGGCCATGAGGGCGGGCGGCGGTGGCGGTGCCAGTCTGGGCGGACGGATG
GGCGACTCGATGCCGGATTATGATAATGTTAAGGACGACTACGATCTATT
GGATGCCAGCATTTTGAGTGATAATAAATTAGGATTTGTTCAGCTGCGCG
ACAATAAATTGAAAATTCAAGAAGCCGCAGGCGCCGATGGTCAGCGCCTG
GCCGGAATGCTTCTCAATGGCGGTGGCGGTGGTGGTGGAGCCGGAGCGTT
TGGCGTCAATGTACCGCTCATACCCTGGGGCCAGGTGCTGCCGGACAAGG
TGGAGGAGACCCTGCCCCATTTCCCGTTTGGCACACGGCCCATCGATGGC
GCCTGGCAGGTTGTCAACGGCACCCGCTTCAAGTTCTTTGTCTACTCCGC
CTACTTCGACCGGCGCGAAGGAGCACGCCTGGTGCGAGTGGTGGGCGCCA
CCAAGACTCGGGGACCGGAGCGGGTGTGGTGTCGATTCTGGTACGGACCG
AGTGCTGGCAATGGCACCGATGCGGGCTCCTCCACGGCACGTGCCAAGTA
CTCCTCGGCCACTGTGATGGCTCGCGTCAAGATTATTCGCGAGAAAGTGG
AATCTAAAATACAGCGCCCTGTTTCATACTGTGCCCGGTACGAACTCCAC
CGCTGTCAGTTTCCTCATTTTCGTGAGCGTGGTATCCCGTTTGCGTGCTC
CGCCTTGTAATTTGCTGACTCTACGAAACACCGACCAGTATGCGGACTTT
GCGGCGAGCATAGCGCGTAAT
FMO12076.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9395-RD | 3898 | CG9395-RD | 574..1483 | 8..921 | 4395 | 99 | Plus |
| CG9395-RC | 4191 | CG9395-RC | 867..1776 | 8..921 | 4395 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13352801..13353212 | 731..320 | 2060 | 100 | Minus |
| 2L | 23513712 | 2L | 13352448..13352635 | 921..730 | 685 | 95.3 | Minus |
| 2L | 23513712 | 2L | 13353714..13353836 | 234..112 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 13354100..13354207 | 115..8 | 540 | 100 | Minus |
| 2L | 23513712 | 2L | 13353312..13353401 | 321..232 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:22:04 has no hits.
FMO12076.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:55 Download gff for
FMO12076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9395-RC | 234..1152 | 1..921 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:57 Download gff for
FMO12076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9395-RC | 858..1776 | 1..921 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:50 Download gff for
FMO12076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9395-RC | 858..1776 | 1..921 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:50 Download gff for
FMO12076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13352448..13352633 | 732..921 | 95 | <- | Minus |
| 2L | 13352801..13353210 | 322..731 | 100 | <- | Minus |
| 2L | 13353312..13353399 | 234..321 | 100 | <- | Minus |
| 2L | 13353715..13353834 | 114..233 | 100 | <- | Minus |
| 2L | 13354102..13354210 | 1..113 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:57 Download gff for
FMO12076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13352448..13352633 | 732..921 | 95 | <- | Minus |
| arm_2L | 13352801..13353210 | 322..731 | 100 | <- | Minus |
| arm_2L | 13353312..13353399 | 234..321 | 100 | <- | Minus |
| arm_2L | 13353715..13353834 | 114..233 | 100 | <- | Minus |
| arm_2L | 13354102..13354210 | 1..113 | 96 | | Minus |
