Clone FMO12077 Report

Search the DGRC for FMO12077

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:77
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12866-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12077.5prime Sequence

1131 bp (1033 high quality bases) assembled on 2012-06-25

> FMO12077.5prime
CAGTCGACATGGTCAGTGTGGCCGTCGGCACAGTTTCAACGGATATCCTG
AATGGGCGCACATCATTCTTGTCCCTTAGTCAGTCTCACGGGAGTGAAGT
GGATTTGCCTTCGTTCTACGAAAGCTTTAATCCAACTTTTCTTCCCAAGC
TGCCTATCAGAAGATTTCCCCATATGCTTGTGGGGGCATCAAATGAGCCT
GAGATTTCGAAAAACCAGCCAGCAATTCCACCATCTAGGCCAATTGAGCC
AATATCTGAGGTGCCGTTTGTGGAACCGGCCTTTGAGAAAAAATACTCTA
GGACCCGTGGATTTAGCAAGGAATTGTCCACACACAGGGATAATGAGAAT
GAATATATCGAGAGCACAGATGAGGTGTCTCAGATGTTGAGCTTTACTAG
CTATACGGATGAATATGATAGGGCAGAACCACTCATTACCAAAACGCAAA
AGTTTTATAAAAAGAGATCCCCCTTGATTCCCAAATACGATTCCGAGGAT
TCATATGTGGTCCCTAAGGAAACCGATCAACAGGAATCGGGTCTCTCGTT
CAATGTAACTACAGTACAGTTGGCCGATACCGCATCGCCGGAATCTTTCA
GCGAATACGACGGAAATCGAACGCGCAAGCAATCGTTCGACATGGAAAGT
AAAAATTCGAAGGAGTCCTTTGACTTTAGCCGTGGTGGAAGACGACTTGG
CTCCGGTATGGTTTTTATCTATATGGTGATACCACCGGACGGCGGATTCG
GTTGGGTAATCATGGTGCTGTCCTTCCTCGCCCAGCTGATAATCGATGGT
TTAATTTTTACCATTGGGGTCTTATTGCCATCCATTGCCCAGGATCTGGA
TGTCTCCATATCGTCGGTATCGTTTGTGGCCAGTGTCCAGATTGGTTTGC
TACTTCACTAGCGGAGCGTTTTCTGCTGTCTGATAAATCGTTTTGGTTTC
CGAAAGGTAGCCATCGCTGGGGTCCTGTGTTCGCAGTTTCAATACTGCGT
TCAGTTGGAGCGTCAGCTTGACCATGCTGATCTTCCTTTACAGCGTCTTG
GTGGAATTAAGGTTGAAACATGAATCTGGGCAGTTCGCAACTGATTGTTG
CTACTACTTGAACGTACGGTTCGATGCCAAT

FMO12077.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12866-RC 2809 CG12866-RC 197..1324 9..1131 5200 98.1 Plus
CG12866-RB 2806 CG12866-RB 194..1321 9..1131 5200 98.1 Plus
CG12866-RE 2810 CG12866-RE 194..1325 9..1131 5150 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14668644..14669101 9..466 2290 100 Plus
2R 25286936 2R 14669587..14669919 717..1047 1440 98.2 Plus
2R 25286936 2R 14669268..14669518 466..716 1255 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:22:07 has no hits.

FMO12077.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:56 Download gff for FMO12077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12866-RC 192..1312 1..1120 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:58 Download gff for FMO12077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12866-RB 189..1309 1..1120 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:51 Download gff for FMO12077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12866-RB 189..1309 1..1120 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:51 Download gff for FMO12077.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14669268..14669518 466..716 100 -> Plus
2R 14669587..14669923 717..1050 97 -> Plus
2R 14668639..14669100 1..465 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:58 Download gff for FMO12077.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10556144..10556605 1..465 99 -> Plus
arm_2R 10556773..10557023 466..716 100 -> Plus
arm_2R 10557092..10557428 717..1050 97 -> Plus