FMO12080.5prime Sequence
1153 bp (987 high quality bases) assembled on 2012-06-25
> FMO12080.5prime
CAGTCGACATGCGCAAATTGGAGCATTGTAATATTGTGAAGCTTTTGTAC
TTTTTCTATTCGAGTGGTGAAAAGCGTGATGAAGTATTTTTGAATTTAGT
CCTCGAATATATACCAGAAACCGTATACAAAGTGGCTCGCCAATATGCCA
AAACCAAGCAAACGATACCAATCAACTTTATTCGGCTCTACATGTATCAA
CTGTTCAGAAGTTTGGCCTACATCCACTCGCTGGGCATTTGCCATCGTGA
TATCAAGCCGCAGAATCTTCTGCTCGATCCGGAGACGGCTGTGCTGAAGC
TCTGTGACTTTGGCAGCGCCAAACAGCTGCTGCACGGCGAGCCGAATGTA
TCGTATATCTGCTCCCGGTATTACCGCGCCCCCGAGCTCATCTTTGGCGC
CATCAATTATACAACAAAGATCGATGTCTGGAGTGCCGGTTGCGTTTTGG
CCGAACTGCTGCTGGGCCAGCCCATCTTCCCTGGCGATTCCGGTGTGGAT
CAGCTCGTCGAGGTCATCAAGGTCCTGGGCACACCGACAAGAGAACAGAT
ACGCGAAATGAATCCAAACTACACGGAATTCAAGTTCCCTCAGATTAAGA
GTCATCCATGGCAGAAAGTTTTCCGTATACGCACTCCTACAGAAGCTATC
AACTTGGTGTCCCTGCTGCTCGAGTATACGCCCAGTGCCAGGATCACACC
GCTCAAGGCCTGCGCACATCCGTTCTTCGATGAGCTACGCATGGAGGGTA
ATCACACCTTGCCCAACGGTCGCGATATGCCGCCGCTGTTTCAACTTCAC
AGAGCATGAGCTCTCAATACAGCCCAGCCTAGTGCCGCAGTTGTTGCCCA
AGCATCTGCAGAACGCATCCGGACCTGGCCGGCAATCGACCCTCGGCCGG
CGGAGCAGCCTCCATTGCGGCCAGCGCTCCACCAGCGTTCTCGTCAACGG
GCAGTGTGCCTCGGTGAAGGATCCGCCCAGCCACAGTCGCAGGTAACAGC
AGCAGCTGCGGATTCCGGAATTCGGGCGGAGCAACAGCAGGAACCGTCGG
AGCGAGTTCCGTGTGAACTGGATTTTGTTAAACAACAATAACCACGGCCG
AAACCATCGAGCCGCCCGTCCGCTTGTGGCTTACCGAAAGAACCAATTCC
GCC
FMO12080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-RR | 5004 | CG5-RR | 1309..2359 | 9..1061 | 5000 | 98.7 | Plus |
| sgg-RQ | 4499 | CG5-RQ | 2511..3561 | 9..1061 | 5000 | 98.7 | Plus |
| sgg-RO | 2166 | CG2621-RO | 556..1606 | 9..1061 | 5000 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2671307..2671545 | 185..423 | 1195 | 100 | Plus |
| X | 23542271 | X | 2671628..2671824 | 423..619 | 985 | 100 | Plus |
| X | 23542271 | X | 2672914..2673103 | 618..808 | 905 | 99.5 | Plus |
| X | 23542271 | X | 2673174..2673426 | 808..1061 | 880 | 94.9 | Plus |
| X | 23542271 | X | 2671119..2671231 | 73..185 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 31373036..31373316 | 252..532 | 490 | 78.3 | Plus |
| X | 23542271 | X | 2670192..2670257 | 9..74 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:22:14 has no hits.
FMO12080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:57 Download gff for
FMO12080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RH | 754..1816 | 9..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:03 Download gff for
FMO12080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RO | 556..1618 | 9..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:54 Download gff for
FMO12080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RO | 556..1618 | 9..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:54 Download gff for
FMO12080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2673175..2673441 | 809..1077 | 93 | -> | Plus |
| X | 2672914..2673103 | 618..808 | 99 | -> | Plus |
| X | 2670192..2670257 | 9..74 | 100 | -> | Plus |
| X | 2671121..2671231 | 75..185 | 100 | -> | Plus |
| X | 2671308..2671545 | 186..423 | 100 | -> | Plus |
| X | 2671629..2671822 | 424..617 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:03 Download gff for
FMO12080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2565341..2565578 | 186..423 | 100 | -> | Plus |
| arm_X | 2564225..2564290 | 9..74 | 100 | -> | Plus |
| arm_X | 2565154..2565264 | 75..185 | 100 | -> | Plus |
| arm_X | 2565662..2565855 | 424..617 | 100 | -> | Plus |
| arm_X | 2566947..2567136 | 618..808 | 99 | -> | Plus |
| arm_X | 2567208..2567474 | 809..1077 | 93 | -> | Plus |
