Clone FMO12081 Report

Search the DGRC for FMO12081

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:81
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSPoCk-RE
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12081.5prime Sequence

1032 bp (419 high quality bases) assembled on 2012-06-25

> FMO12081.5prime
CAATCCACATGATATTCATCAATGCCTCTGACACTGGCCTTACCCTCACA
CCTGAAATGCTGTTGTCCACCTCGGAATCATCGACCCACATTGCCTCCGA
GGTCCCCGGACGACTGCAGGTCGACGTGCGTACCGGCCTCAAATGGACAG
AGGCCAAGTATCGTGCCAAGATCATCGGGCATAACGAGCTGCTGCTCGTG
GCGGAGGATCCGACATGGAAAAAGTACATTGAGCATTTTAAGAACCCGCT
AATTCTGCTGCTTCTTGGTTCTGCTCTGGTGTCCGTAATCATGAATCAGT
TTGACGACGCCGTGAGCATAACCATTGCCATCCTAATTGTGGTCACGGTG
GCCTTTATCCAGGATTACCGCTCCGATAAGAGTCTGGATGAGCTTAAAAA
GCTGGTGCCCCCTGAATGCCACTGCCTGCGGGAAGGTCGTCTAGACACAT
TCCTGGCACGCGAACTGGTTCCCGGGGACATACTGCACCTCAACGAGGGC
GACCGGGTGCCGGCCGACGTGCGTCTTTTCGAAGCTGTGGACCTATCTAT
CGACAAGAGCAGTTTTACCGGCGAAACAGAGCCGGCGCGCAAAATTACTG
ATGTTTTGCTTAACAATACGAACGTAAAGGACCACAACACCCTGAAGAAC
ATTGCCTTCATGGGCACTCTGGTGCGATGTGGTACGGGAAGGGCATAGTT
GTCAACACTGGGGAGCGTCCTGAGTTCAGTGAGGTCTTCAAATGATGCAT
GCAGAGGAGGCTCCGAATACGCCACTGCAAAATCGATGGACATTCTAGGC
GCTCAATTGAGCTTCTACTCCTTCCTGATTATCGGTGTCATCATGCTGCT
GGGCTGGCTACAAGGTAAGCCGCTTTCGGAAATGTTCATATCAGCGTTTC
CCTGGACGTTGCGGTCATCACCAGAGTGACTTACATATTCGTGGCTAACT
GTGACTCTAACGCTTGCCGTATTGCGAATGACTAAACGAATTTCATTCGT
TAACAAGTCTGCTACTGCTGAAACTTTGGTCT

FMO12081.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
SPoCk-RF 4059 CG50-RF 558..1578 9..1029 4220 94.7 Plus
SPoCk-RE 4245 CG32451-RE 744..1764 9..1029 4220 94.7 Plus
SPoCk-RA 3659 CG32451-RA 181..1178 32..1029 4120 94.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22777114..22778107 36..1029 3905 94.4 Plus
Blast to na_te.dros performed on 2014-11-28 03:22:17 has no hits.

FMO12081.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:58 Download gff for FMO12081.5prime
Subject Subject Range Query Range Percent Splice Strand
SPoCk-RE 736..1764 1..1029 94   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:06 Download gff for FMO12081.5prime
Subject Subject Range Query Range Percent Splice Strand
SPoCk-RE 736..1764 1..1029 94   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:56 Download gff for FMO12081.5prime
Subject Subject Range Query Range Percent Splice Strand
SPoCk-RE 736..1764 1..1029 94   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:56 Download gff for FMO12081.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22777108..22778107 32..1029 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:06 Download gff for FMO12081.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22770208..22771207 32..1029 94   Plus