FMO12082.5prime Sequence
1160 bp (1034 high quality bases) assembled on 2012-06-25
> FMO12082.5prime
CAGTCGACATGCCTGATATGATGCCAATGGCTAATTCATTCAATCCACTC
ATTAACATAAATCAGGAAGCGGGTGTGGTAATTAACACAGGAATAAATTC
AATAGACAATGGACTACCAAGTACATACAGTGAACACATATCTCAGCCAA
CTAATACAGAATCTACAAGGAATATGAATTCTTCAATTTTTGATATTCCC
AGCGATCTAGACAATAATTCTTCAAATGAGTCTGGCGATGAAGTAACTCA
GCCCACTGCTAAACAATCTAAAATAAATGCGAATTTTGTTTGTAAAATAG
AAAGCGATACAAACATGGATAAATTACCAACTACGTCCAATAATACAAAC
GACAAGCCGCCAAATAACACAGATTCTGATTCGGATATTATTTCAATTTC
TGATTTAATTGAAGATTTAAATTTGGATTTTAATCAACTACCGATTACCT
CTTGTGACGTAGAAACCCATCCAGCAGACACACAATCTAATATCGATGCT
AATTTGCCATATGATTTGATAAGTGCCATAAATATGGACTTTGTCAATCC
AGCTAACAGAACATATATGTCAGCTGCCAATTCAACACGAGGAACCGCCT
ACAAGATTAGAAAGCCCCGGACGGTCAAGAGAATCATTAAGGCGCCATCA
AAGTCCAACATTGGAAAGTTGTTGAGGGAAGCTGCCAAGAAGGAAAATGC
GGCTGCGGGAACGCAGAGACCGAAGAAGGCCACGTCGACGATAACATCTT
CAGTTCAAAACTTTCCAAATCCCAATAATTGGCCTGCATGCCCATTTCCG
ATGCAGAACGGCACTATGCCAGCAGATGAACCCATGACTTAATGCCAACG
GTTTCGCAAAGTCTAACAGTGCCAGCTGCTCAAATCGTCCAATACAAACA
ATCGGAAAGATTATTAGCCTTCTGTCAGCGGACTTACACGAAGAGAGCCA
ATAGACCATAATACAATTATACCAAATAAAATAGTACTGGGGTTCATACA
GTCCTATGGAGTGCACCTACAATACGACCAGGACTTGTAAAGCCCGGGCG
GACTAATATTCTGATGCCATGAATAAGCCAAATACCAATGCTGTCTGTTG
CTGAAAATCCCACGAGTACAACCATCGATATAAATATTGTGCCCTCCACC
CAAGCGTAAC
FMO12082.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2861-RE | 5967 | CG2861-RE | 507..1662 | 9..1158 | 5210 | 97.6 | Plus |
| CG2861-RD | 5932 | CG2861-RD | 507..1662 | 9..1158 | 5210 | 97.6 | Plus |
| CG2861-RC | 2875 | CG2861-RC | 376..1531 | 9..1158 | 5210 | 97.6 | Plus |
| CG2861-RE | 5967 | CG2861-RE | 1903..2004 | 927..1025 | 180 | 81.6 | Plus |
| CG2861-RD | 5932 | CG2861-RD | 1903..2004 | 927..1025 | 180 | 81.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4802179..4803334 | 1158..9 | 4910 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:21:57 has no hits.
FMO12082.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:54 Download gff for
FMO12082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2861-RC | 371..1532 | 1..1160 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:53 Download gff for
FMO12082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2861-RC | 371..1532 | 1..1160 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:46 Download gff for
FMO12082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2861-RC | 371..1532 | 1..1160 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:46 Download gff for
FMO12082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4802178..4803339 | 1..1160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:53 Download gff for
FMO12082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4696211..4697372 | 1..1160 | 97 | | Minus |
