FMO12083.5prime Sequence
1129 bp (1004 high quality bases) assembled on 2012-06-25
> FMO12083.5prime
CAGTCGACATGGACAAGGTCTTTGCCGGCAACAGTGCGCGCAAGGACAAG
TTCGATGTAAACACCTTCCAGGACAACTCCCAGCTGCCCATTGGATCCCG
CAAGAAGAATAGCATCCGCACAAACGATCTGAACATCGAGGAGGACTCGG
AGTACGAGAGCCAAACGGAGCCATTGAATAATGCACAAAACTATGATGAC
ATCCCCGAAGACTTCCCGCTAGTCTCGGAGAGAGCCGGACACGGCGATCA
CTCGGACAACTCGGTGGACGAGAAGCACGTCCAGTTTGGCGGCAAAAAGA
AGATCCCGCCCAGTTTGAGCTATGATGAACAGCCCACGGACCAATCGCAC
GAACGTAAACGCAGAAGAAGCCGCCATCAGTATTATAGACAACGTAAATT
CTCACATCAGGACAGCGTGGAACCCAAAAACAAGCTCGAGGAAAACGGTG
ATGCAGGTGCGCGTCGCATCTCTGTGCAGCCTGAGGACACGGCATTGGAG
GAGGCTGATCTTAACGAGCTGAGATCACATCGTTCGGACGACCCGCGTGC
CCTGCGCCGCCATAAGATCCATCACTCATCCATCAAGTTGCGCGAGTTGC
CCCAAATAACGATTTCCCCCTTCACCAACAAGAAGCCCGAGGTGGATCAT
AGTCCTCATGAGATCTTTGTGCAATTGGATGAGCTCACAGGCGTGGGCGA
GGATCGCGAATGGAAGGAGACGGCCCGTTGGATCAAGTATGAGGAGGACG
TGGAGGAGGGCTCCGATCGTTGGGGCAAGCCCCATGTTGCCTCCCTCTCC
TTCCACTCGCTGCTCAATTTGCGTCGCTGCCTGAAACGGGCGTTGTCCTG
CTCGATCTTAACGAGAAGGACCTGCCTGCCGTGCCCTATCGCGTGTAAAC
AGATGGTGATCGAGGACCTGATTGACATCATGACAAGCCATCGTGATGCG
TTCGCTGCTCCTGCGCATCGCCATGTCACGACACCAAAGGTGTGCTGCCC
TTCACAGAGGAAGTACCAACAGCTACACCAGCCTGCAGTGAGATCATCCC
TATGCCGATTATCAATCATTCCAAATGGTTTCGCTTAAACCCCCCGACGA
TTTCTTGTACAATTCTCAAGGCCTTCTGT
FMO12083.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8177-RL | 1450 | CG8177-RL | 263..1370 | 9..1108 | 5050 | 97.8 | Plus |
| CG8177-RE | 5099 | CG8177-RE | 263..1301 | 9..1039 | 4900 | 98.8 | Plus |
| CG8177-RA | 5144 | CG8177-RA | 538..1576 | 9..1039 | 4900 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9779652..9779907 | 115..370 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 9780764..9780999 | 661..895 | 1115 | 99.2 | Plus |
| 3L | 28110227 | 3L | 9780534..9780697 | 499..662 | 820 | 100 | Plus |
| 3L | 28110227 | 3L | 9780121..9780253 | 369..501 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 9779488..9779593 | 9..114 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 9781075..9781275 | 900..1094 | 415 | 90.6 | Plus |
| 2L | 23513712 | 2L | 7234759..7234879 | 827..707 | 185 | 76.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:15:05 has no hits.
FMO12083.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:56 Download gff for
FMO12083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RE | 251..1301 | 1..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:47 Download gff for
FMO12083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RL | 254..1370 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:23 Download gff for
FMO12083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RL | 254..1370 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:23 Download gff for
FMO12083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9779479..9779593 | 1..114 | 96 | -> | Plus |
| 3L | 9779652..9779907 | 115..370 | 100 | -> | Plus |
| 3L | 9780123..9780252 | 371..500 | 100 | -> | Plus |
| 3L | 9780536..9780697 | 501..662 | 100 | -> | Plus |
| 3L | 9780766..9781008 | 663..902 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:47 Download gff for
FMO12083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9772579..9772693 | 1..114 | 96 | -> | Plus |
| arm_3L | 9772752..9773007 | 115..370 | 100 | -> | Plus |
| arm_3L | 9773223..9773352 | 371..500 | 100 | -> | Plus |
| arm_3L | 9773636..9773797 | 501..662 | 100 | -> | Plus |
| arm_3L | 9773866..9774108 | 663..902 | 98 | -> | Plus |
