FMO12084.5prime Sequence
662 bp (662 high quality bases) assembled on 2012-06-25
> FMO12084.5prime
CAGTCGACATGGAGAACGTTTCCAAGATTTGGCTGGGTCCCCTGCCCCAG
GATTCGCCGTACGTAAAGCCCTTCCGGCTGTACTACGTCCAGAATGGCGT
GGAGAAGAACTGGGACCTGCTGAAGGTCCACGATAGTGTGGCTATTATCT
TGTACAACACTTCTCGCCAGAAACTGGTCCTGGTCCGCCAGTTCCGACCC
GCCGTCTACCACGGCATCATCTCCAGCGCCAAGGGCACCTTCGATGAGGT
GGACCTCAAGGAGTTCCCGCCCGCCATCGGTGTCACCTTGGAACTGTGCG
CCGGCATCGTGGACAAAAACAAAAGCTGGGTGGAAATCGCTCGGGAGGAA
GTGGTCGAGGAGTGTGGCTACGATGTGCCCGTGGAACGCATTGAGGAAGT
CATGGTCTACAGATCTGGAGTTGGTTCATCGGGTGCCAAGCAGACCATGT
ACTACTGCGAGGTGACCGATGCGGACAAGGCCACAGGTGGTGGCGGCGTC
GACGACGAGATCATCGAGGTGGTGGAGCTGTCCCTGGAGGAGGCCAAGCG
GATGATCCAACAGGGAGCCGTCAACAACAGCCCGCCCAGCTGCCTGATGG
GCCTGATGTGGTTCTTCGCCAACAGGGCACCCGGTGCGAAGGCCGCAAGC
TTTCTAGACCAT
FMO12084.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42813-RA | 957 | CG31063-RA | 51..687 | 8..644 | 3185 | 100 | Plus |
| CG42813-RB | 1366 | CG42813-RB | 90..726 | 8..644 | 3185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27228068..27228472 | 412..8 | 2025 | 100 | Minus |
| 3R | 32079331 | 3R | 27227710..27227944 | 644..410 | 1175 | 100 | Minus |
| 3L | 28110227 | 3L | 15100462..15100643 | 591..410 | 685 | 91.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:15:09 has no hits.
FMO12084.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:57 Download gff for
FMO12084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42813-RA | 48..687 | 1..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:50 Download gff for
FMO12084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42813-RA | 48..687 | 1..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:25 Download gff for
FMO12084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42813-RB | 87..726 | 1..644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:25 Download gff for
FMO12084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27227710..27227941 | 413..644 | 100 | <- | Minus |
| 3R | 27228068..27228475 | 1..412 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:50 Download gff for
FMO12084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23053432..23053663 | 413..644 | 100 | <- | Minus |
| arm_3R | 23053790..23054197 | 1..412 | 99 | | Minus |
