FMO12085.5prime Sequence
671 bp (671 high quality bases) assembled on 2012-06-25
> FMO12085.5prime
CAGTCGACATGAATCATCCAATACTCTACTCGTATTGGCGCAGCTCGTGC
TCCTGGCGCGTGCGCATTGCGATGAACCTGAAGGAGATACCCTACGACAT
CAAGCCGATCAGCCTGATCAAATCCGGTGGCGAGCAGCACTGCAATGAGT
ACCGCGAGGTGAATCCAATGGAGCAGGTGCCCGCCCTACAGATTGATGGA
CACACCCTCATCGAATCGGTAGCCATAATGCACTACCTGGAGGAAACACG
TCCCCAGCGACCACTCCTGCCACAGGACGTCCACAAGCGGGCCAAGGTGC
GCGAAATAGTCGAGATCATTTGCTCTGGCATCCAGCCCCTGCAGAACCTC
ATCGTGCTCATCCATGTGGGCGAGGAGAAGAAGAAGGAGTGGGCCCAGCA
CTGGATTACACGAGGCTTCCGGGCGGTTGAGAAGGCGCTGTCCACTTCGG
CCGGCAAATATTGCGTGGGCGATGAGATCTCCATGGCGGACTGCTGCCTC
GTACCTCAGGTGTTCAATGCCCGAAGATTCCACGTCGACTTGCGACCGTA
TCCCATAATTCTGCGCATCGATCGCGAACTGGAGAGCAATCCGGCATTCC
GGGCGGCCCATCCCTCCAATCAACCGGACTGTCCGCCGGAGCTGCCCAAC
AAAGCAAGCTTTCTAGACCAT
FMO12085.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstZ2-RC | 1093 | CG9363-RC | 40..685 | 8..653 | 3230 | 100 | Plus |
| GstZ2-RA | 1062 | CG9363-RA | 75..710 | 18..653 | 3180 | 100 | Plus |
| GstZ2-RB | 2202 | CG9363-RB | 383..1018 | 18..653 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9458203..9458534 | 526..195 | 1660 | 100 | Minus |
| 3R | 32079331 | 3R | 9458595..9458772 | 195..18 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 9457999..9458127 | 653..525 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:15:19 has no hits.
FMO12085.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:42:06 Download gff for
FMO12085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9363-RC | 31..679 | 1..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:56 Download gff for
FMO12085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstZ2-RC | 37..685 | 1..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:30 Download gff for
FMO12085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstZ2-RC | 37..685 | 1..653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:30 Download gff for
FMO12085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9457999..9458125 | 527..653 | 100 | <- | Minus |
| 3R | 9458203..9458533 | 196..526 | 100 | <- | Minus |
| 3R | 9458595..9458782 | 5..195 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:56 Download gff for
FMO12085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5283721..5283847 | 527..653 | 100 | <- | Minus |
| arm_3R | 5283925..5284255 | 196..526 | 100 | <- | Minus |
| arm_3R | 5284317..5284504 | 5..195 | 97 | | Minus |
