FMO12087.5prime Sequence
880 bp (880 high quality bases) assembled on 2012-06-25
> FMO12087.5prime
CAGTCGACATGGATGCCATCAAGAAGAAGATGCAAGCGATGAAAGTCGAC
AAGGACGGAGCTCTGGAGCGCGCTCTCGTCTGCGAGCAGGAGGCACGCGA
TGCTAACACCCGCGCCGAGAAGGCCGAGGAGGAGGCTCGCCAGCTGCAGA
AGAAGATCCAGACCGTTGAGAACGAGCTGGATCAGACCCAGGAAGCCCTG
ACCCTGGTCACCGGCAAGCTGGAGGAGAAGAACAAGGCTCTGCAGAACGC
CGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTTGCTCGAAGAAG
ACTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACAGCCAAGCTGTCG
GAAGCCTCTCAGGCCGCCGATGAGAGCGAACGGATACGAAAAGCGCTTGA
GAATCGCACAAATATGGAAGATGACAAAGTAGCTCTCTTGGAGAACCAGT
TAGCGCAAGCAAAATTAATTGCAGAAGAAGCTGATAAGAAATACGAAGAG
GTGGCCAGAAAACTCGTGCTCATGGAACAGGATCTGGAGCGTTCCGAGGA
GAAGGTCGAGCTCAGCGAAAGCAAAATTGTGGAGCTTGAGGAGGAGCTGC
GCGTGGTTGGCAACAACCTGAAGTCCCTGGAAGTCTCTGAGGAGAAGGCC
AACCAACGTGAGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACCCG
TCTAAAGGAGGCTGAGGCTCGTGCTGAGTTCGCTGACGCTCCGTTCAGAA
ATTGCAGAAGGAAGTCGACAGGCTCGAAGACGACCTCGTCCTGAAGAAGG
AGCGCTACAAGGACATCGGAGACGATCTCGACACCGCCTTCGTCGAGCTC
ATCCTCAAGGAAGCAAGCTTTCTAGACCAT
FMO12087.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm1-RN | 1253 | CG4898-RN | 88..945 | 6..862 | 4250 | 99.8 | Plus |
Tm1-RS | 1253 | CG4898-RS | 88..945 | 6..862 | 3845 | 96.6 | Plus |
Tm1-RL | 2194 | CG4898-RL | 88..869 | 6..786 | 3450 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15295113..15295247 | 249..383 | 675 | 100 | Plus |
3R | 32079331 | 3R | 15285227..15285355 | 121..249 | 645 | 100 | Plus |
3R | 32079331 | 3R | 15295426..15295546 | 382..502 | 605 | 100 | Plus |
3R | 32079331 | 3R | 15284646..15284763 | 6..123 | 590 | 100 | Plus |
3R | 32079331 | 3R | 15307588..15307672 | 778..862 | 410 | 98.8 | Plus |
3R | 32079331 | 3R | 15300745..15300823 | 570..648 | 395 | 100 | Plus |
3R | 32079331 | 3R | 15300104..15300180 | 495..571 | 370 | 98.7 | Plus |
3R | 32079331 | 3R | 15301009..15301074 | 646..711 | 330 | 100 | Plus |
3R | 32079331 | 3R | 15303151..15303222 | 709..779 | 310 | 98.6 | Plus |
3R | 32079331 | 3R | 15313115..15313197 | 609..691 | 220 | 84.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:15:22 has no hits.
FMO12087.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:42:06 Download gff for
FMO12087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RN | 104..968 | 1..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:58 Download gff for
FMO12087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RN | 86..950 | 1..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:32 Download gff for
FMO12087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RN | 86..950 | 1..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:32 Download gff for
FMO12087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15284644..15284762 | 1..122 | 97 | -> | Plus |
3R | 15285229..15285354 | 123..248 | 100 | -> | Plus |
3R | 15295113..15295246 | 249..382 | 100 | -> | Plus |
3R | 15295427..15295544 | 383..500 | 100 | -> | Plus |
3R | 15300110..15300180 | 501..571 | 100 | -> | Plus |
3R | 15300747..15300822 | 572..647 | 100 | -> | Plus |
3R | 15301011..15301073 | 648..710 | 100 | -> | Plus |
3R | 15303153..15303222 | 711..779 | 98 | -> | Plus |
3R | 15307590..15307677 | 780..868 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:58 Download gff for
FMO12087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11110366..11110484 | 1..122 | 97 | -> | Plus |
arm_3R | 11110951..11111076 | 123..248 | 100 | -> | Plus |
arm_3R | 11120835..11120968 | 249..382 | 100 | -> | Plus |
arm_3R | 11121149..11121266 | 383..500 | 100 | -> | Plus |
arm_3R | 11125832..11125902 | 501..571 | 100 | -> | Plus |
arm_3R | 11126469..11126544 | 572..647 | 100 | -> | Plus |
arm_3R | 11126733..11126795 | 648..710 | 100 | -> | Plus |
arm_3R | 11128875..11128944 | 711..779 | 98 | -> | Plus |
arm_3R | 11133312..11133399 | 780..868 | 96 | | Plus |