Clone FMO12087 Report

Search the DGRC for FMO12087

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:87
Vector:pMK33-CFH-BD
Associated Gene/TranscriptTm1-RN
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12087.5prime Sequence

880 bp (880 high quality bases) assembled on 2012-06-25

> FMO12087.5prime
CAGTCGACATGGATGCCATCAAGAAGAAGATGCAAGCGATGAAAGTCGAC
AAGGACGGAGCTCTGGAGCGCGCTCTCGTCTGCGAGCAGGAGGCACGCGA
TGCTAACACCCGCGCCGAGAAGGCCGAGGAGGAGGCTCGCCAGCTGCAGA
AGAAGATCCAGACCGTTGAGAACGAGCTGGATCAGACCCAGGAAGCCCTG
ACCCTGGTCACCGGCAAGCTGGAGGAGAAGAACAAGGCTCTGCAGAACGC
CGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTTGCTCGAAGAAG
ACTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACAGCCAAGCTGTCG
GAAGCCTCTCAGGCCGCCGATGAGAGCGAACGGATACGAAAAGCGCTTGA
GAATCGCACAAATATGGAAGATGACAAAGTAGCTCTCTTGGAGAACCAGT
TAGCGCAAGCAAAATTAATTGCAGAAGAAGCTGATAAGAAATACGAAGAG
GTGGCCAGAAAACTCGTGCTCATGGAACAGGATCTGGAGCGTTCCGAGGA
GAAGGTCGAGCTCAGCGAAAGCAAAATTGTGGAGCTTGAGGAGGAGCTGC
GCGTGGTTGGCAACAACCTGAAGTCCCTGGAAGTCTCTGAGGAGAAGGCC
AACCAACGTGAGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACCCG
TCTAAAGGAGGCTGAGGCTCGTGCTGAGTTCGCTGACGCTCCGTTCAGAA
ATTGCAGAAGGAAGTCGACAGGCTCGAAGACGACCTCGTCCTGAAGAAGG
AGCGCTACAAGGACATCGGAGACGATCTCGACACCGCCTTCGTCGAGCTC
ATCCTCAAGGAAGCAAGCTTTCTAGACCAT

FMO12087.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-RN 1253 CG4898-RN 88..945 6..862 4250 99.8 Plus
Tm1-RS 1253 CG4898-RS 88..945 6..862 3845 96.6 Plus
Tm1-RL 2194 CG4898-RL 88..869 6..786 3450 96.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15295113..15295247 249..383 675 100 Plus
3R 32079331 3R 15285227..15285355 121..249 645 100 Plus
3R 32079331 3R 15295426..15295546 382..502 605 100 Plus
3R 32079331 3R 15284646..15284763 6..123 590 100 Plus
3R 32079331 3R 15307588..15307672 778..862 410 98.8 Plus
3R 32079331 3R 15300745..15300823 570..648 395 100 Plus
3R 32079331 3R 15300104..15300180 495..571 370 98.7 Plus
3R 32079331 3R 15301009..15301074 646..711 330 100 Plus
3R 32079331 3R 15303151..15303222 709..779 310 98.6 Plus
3R 32079331 3R 15313115..15313197 609..691 220 84.3 Plus
Blast to na_te.dros performed on 2014-11-28 03:15:22 has no hits.

FMO12087.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:42:06 Download gff for FMO12087.5prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RN 104..968 1..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:58 Download gff for FMO12087.5prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RN 86..950 1..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:32 Download gff for FMO12087.5prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RN 86..950 1..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:32 Download gff for FMO12087.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15284644..15284762 1..122 97 -> Plus
3R 15285229..15285354 123..248 100 -> Plus
3R 15295113..15295246 249..382 100 -> Plus
3R 15295427..15295544 383..500 100 -> Plus
3R 15300110..15300180 501..571 100 -> Plus
3R 15300747..15300822 572..647 100 -> Plus
3R 15301011..15301073 648..710 100 -> Plus
3R 15303153..15303222 711..779 98 -> Plus
3R 15307590..15307677 780..868 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:58 Download gff for FMO12087.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11110366..11110484 1..122 97 -> Plus
arm_3R 11110951..11111076 123..248 100 -> Plus
arm_3R 11120835..11120968 249..382 100 -> Plus
arm_3R 11121149..11121266 383..500 100 -> Plus
arm_3R 11125832..11125902 501..571 100 -> Plus
arm_3R 11126469..11126544 572..647 100 -> Plus
arm_3R 11126733..11126795 648..710 100 -> Plus
arm_3R 11128875..11128944 711..779 98 -> Plus
arm_3R 11133312..11133399 780..868 96   Plus