Clone FMO12090 Report

Search the DGRC for FMO12090

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:90
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9027-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12090.5prime Sequence

590 bp (590 high quality bases) assembled on 2012-06-25

> FMO12090.5prime
CAGTCGACATGATTTCCTTGCAGTTCAAAATGATGCAATATCTTGTTGTT
AGCCTGGCACTCTGTGCCACAATTTGCTCTGCTGCGCAGACGCGCAATAT
GCCCATTCAAGCCATTGCCTATCTGATTGGACCCGTGCAATCGGATAATA
CCCAGGTCAAGGGCAACGTGACCTTTACGCAGAACGACTGTGGCCAGAAT
GTCCATGTGCGCGTCCAGCTGGAGGGATTGAAGGAGGGCAAGCACGGCTT
CCACATTCACGAGAAGGGAGATCTGACCAATGGATGCATCAGCATGGGTG
CTCACTATAACCCCGATAAGGTTGATCACGGTGGCCCCGATCACGAGGTG
CGTCATGTTGGCGATCTGGGCAACCTGGAGGCCAACTCCACGGGCATTAT
CGACGTTACATACACGGATCAGGTGATCACCTTAACTGGCAAGCTGGGGA
TCATTGGCAGGGGAGTTGTTGTCCACGAATTGGAGGATGATCTCGGTCTG
GGCAACCACACGGATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGC
CTGTGGTGTTATTGGCATCAAGGCAAGCTTTCTAGACCAT

FMO12090.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-RA 896 CG9027-RA 99..649 22..572 2755 100 Plus
Sod3-RE 1228 CG9027-RE 99..648 22..571 2750 100 Plus
Sod3-RD 1095 CG9027-RD 99..648 22..571 2750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11381949..11382183 326..92 1160 99.6 Minus
2R 25286936 2R 11381663..11381893 549..319 1155 100 Minus
2R 25286936 2R 11382249..11382332 92..9 420 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:15:29 has no hits.

FMO12090.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:42:08 Download gff for FMO12090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9027-RC 1757..2323 9..576 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:03 Download gff for FMO12090.5prime
Subject Subject Range Query Range Percent Splice Strand
Sod3-RA 90..652 14..576 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:35 Download gff for FMO12090.5prime
Subject Subject Range Query Range Percent Splice Strand
Sod3-RA 90..652 14..576 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:35 Download gff for FMO12090.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11381955..11382182 93..320 100 <- Minus
2R 11382249..11382332 9..92 100   Minus
2R 11381568..11381594 550..576 92 <- Minus
2R 11381663..11381891 321..549 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:03 Download gff for FMO12090.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7269168..7269396 321..549 100 <- Minus
arm_2R 7269073..7269099 550..576 92 <- Minus
arm_2R 7269460..7269687 93..320 100 <- Minus
arm_2R 7269754..7269837 9..92 100   Minus