FMO12090.5prime Sequence
590 bp (590 high quality bases) assembled on 2012-06-25
> FMO12090.5prime
CAGTCGACATGATTTCCTTGCAGTTCAAAATGATGCAATATCTTGTTGTT
AGCCTGGCACTCTGTGCCACAATTTGCTCTGCTGCGCAGACGCGCAATAT
GCCCATTCAAGCCATTGCCTATCTGATTGGACCCGTGCAATCGGATAATA
CCCAGGTCAAGGGCAACGTGACCTTTACGCAGAACGACTGTGGCCAGAAT
GTCCATGTGCGCGTCCAGCTGGAGGGATTGAAGGAGGGCAAGCACGGCTT
CCACATTCACGAGAAGGGAGATCTGACCAATGGATGCATCAGCATGGGTG
CTCACTATAACCCCGATAAGGTTGATCACGGTGGCCCCGATCACGAGGTG
CGTCATGTTGGCGATCTGGGCAACCTGGAGGCCAACTCCACGGGCATTAT
CGACGTTACATACACGGATCAGGTGATCACCTTAACTGGCAAGCTGGGGA
TCATTGGCAGGGGAGTTGTTGTCCACGAATTGGAGGATGATCTCGGTCTG
GGCAACCACACGGATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGC
CTGTGGTGTTATTGGCATCAAGGCAAGCTTTCTAGACCAT
FMO12090.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod3-RA | 896 | CG9027-RA | 99..649 | 22..572 | 2755 | 100 | Plus |
Sod3-RE | 1228 | CG9027-RE | 99..648 | 22..571 | 2750 | 100 | Plus |
Sod3-RD | 1095 | CG9027-RD | 99..648 | 22..571 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11381949..11382183 | 326..92 | 1160 | 99.6 | Minus |
2R | 25286936 | 2R | 11381663..11381893 | 549..319 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 11382249..11382332 | 92..9 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:15:29 has no hits.
FMO12090.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:42:08 Download gff for
FMO12090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9027-RC | 1757..2323 | 9..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:03 Download gff for
FMO12090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RA | 90..652 | 14..576 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:35 Download gff for
FMO12090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RA | 90..652 | 14..576 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:35 Download gff for
FMO12090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11381955..11382182 | 93..320 | 100 | <- | Minus |
2R | 11382249..11382332 | 9..92 | 100 | | Minus |
2R | 11381568..11381594 | 550..576 | 92 | <- | Minus |
2R | 11381663..11381891 | 321..549 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:03 Download gff for
FMO12090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7269168..7269396 | 321..549 | 100 | <- | Minus |
arm_2R | 7269073..7269099 | 550..576 | 92 | <- | Minus |
arm_2R | 7269460..7269687 | 93..320 | 100 | <- | Minus |
arm_2R | 7269754..7269837 | 9..92 | 100 | | Minus |