FMO12092.5prime Sequence
1156 bp (1037 high quality bases) assembled on 2012-06-25
> FMO12092.5prime
CAGTCGACATGGCGTCGCTTAAGTTCAAACGCATGCTCAACAAGGAGCTG
TCGCACTTTAGCGAGTCCAGCAGATCGGGAAATCAGATTTCCGAATATAT
ATGTTCCACATTTTTGGACAAGCAACAGGAGTTCGACTTGCCATCGCTGC
GCGTGGAGGATAATCCCGAGCTGGTCGCCGCCAATGCAGCCGCTGGTCAA
CAGTCCGCTGGACAGTATGCACGCTCCCGATCGCCGCGCGGTCCGCCCAT
GTCGCAGATCAGCGGCGTGAAGAGACCGCTGTCGCATACGAATAGCTTTA
CCGGCGAACGTTTGCCCACCTTCGGTGTGGAGACACCCAGGGAGAATGAG
CTGGGCACGCTGCTCGGCGAACTGGACACCTGGGGTATTCAGATATTCAG
CATCGGCGAGTTCAGTGTCAATCGACCGCTCACCTGTGTGGCATACACCA
TATTTCAGAGTAGAGAATTACTGACCAGTCTTATGATACCACCGAAAACT
TTTCTTAACTTTATGTCTACTCTGGAGGACCACTACGTCAAAGACAATCC
GTTTCACAATTCGCTGCATGCCGCCGATGTGACACAAAGCACTAATGTGC
TACTCAATACACCGGCGCTGGAGGGCGTATTCACGCCGCTCGAAGTGGGC
GGGGCGCTGTTCGCCGCTTGCATACACGATGTTGATCATCCCGGCTTAAC
CAATCAGTTCTTGGTTAACTCAAGTTCCGAACTAGCATTAATGTACAATG
ACGAATCTGTTTTGGAAAATCATCATTTAGCTGTTGCCTTTAAATTATTA
CAAAATCAAGGATGTGATATATTCTGTAATATGCAAAAGAAACAACGCCA
AACATTGAGGAAAATGGTTATTGATATTGTGCTGTCCACGGACATGTCCA
AGCACATGAGTCTGCTGGCCGACCTAAGACAATGGTGGAAACCAAAAAGT
GGCCGGCTCCGGAGTACTGCTGCTGGACACTACACCGATCGCATAACAGG
TGCTTGAGATCTGTTGCCACTGGCGCCCGATTCTGACATTCCCACCAGCC
GCTGCCGCTTTACAGCGCTGGTAGCCTGCCTCATGGAGGATTCTTCTGCA
GGCGATAAGACGCGATCGGCATGGACTAGTCCATGTGCGATCCGCTAAAT
GTCCAC
FMO12092.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnc-RU | 9456 | CG32498-RU | 3293..4443 | 5..1142 | 5150 | 97.7 | Plus |
| dnc-RT | 8691 | CG32498-RT | 2528..3678 | 5..1142 | 5150 | 97.7 | Plus |
| dnc-RS | 9576 | CG32498-RS | 3413..4563 | 5..1142 | 5150 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3337241..3337582 | 117..458 | 1710 | 100 | Plus |
| X | 23542271 | X | 3337686..3337955 | 456..725 | 1350 | 100 | Plus |
| X | 23542271 | X | 3338215..3338374 | 839..995 | 650 | 98.1 | Plus |
| X | 23542271 | X | 3338026..3338141 | 724..839 | 580 | 100 | Plus |
| X | 23542271 | X | 3334553..3334648 | 22..117 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:22:31 has no hits.
FMO12092.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:46:00 Download gff for
FMO12092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnc-RN | 1380..2546 | 1..1156 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:14 Download gff for
FMO12092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnc-RS | 3410..4576 | 1..1156 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:03 Download gff for
FMO12092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnc-RS | 3410..4576 | 1..1156 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:03 Download gff for
FMO12092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3334555..3334648 | 24..117 | 100 | -> | Plus |
| X | 3337242..3337582 | 118..458 | 100 | -> | Plus |
| X | 3337689..3337953 | 459..723 | 100 | -> | Plus |
| X | 3338026..3338140 | 724..838 | 100 | -> | Plus |
| X | 3338215..3338377 | 839..999 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:14 Download gff for
FMO12092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3228588..3228681 | 24..117 | 100 | -> | Plus |
| arm_X | 3231275..3231615 | 118..458 | 100 | -> | Plus |
| arm_X | 3231722..3231986 | 459..723 | 100 | -> | Plus |
| arm_X | 3232059..3232173 | 724..838 | 100 | -> | Plus |
| arm_X | 3232248..3232410 | 839..999 | 97 | -> | Plus |
