FMO12093.5prime Sequence
539 bp (-70 high quality bases) assembled on 2012-06-25
> FMO12093.5prime
CTCTCGACATGTACCAGCTGGAGAAGATCTGGGTCCTGCTGTGCCTGGCC
CTCGTCGGTGTCCTTGGCTTCGGCCAGTTCCACATGAAGCACTATCAGCT
GCAGCGTAACTACAATACGCAGGAGGATTCCGGCGAGAATGACAATAGTG
TGCTGCGAACCTTTCGCCGCTGCATGTGGGAGCAGTCGAAGTTTCTGCCC
CGCCGCCTCGTCCTTTTGAGCCTGTGCTCGAATCTCTTCTGCGAGAACAA
TCACATAATGCCCCGTTCCAGCTGCCTGGACATCCTGCCCGAGCAATGCG
AGCAGGGCGATGAGGAGGAGCTGATGTACAAGCCCTTCCCCGACTGCTGT
CCGGTTTATTGCAACCTGAAGCGTCGGATGCAGCGCCTGCGCACCATGCA
CTTCCGGCACCGCCTGCTGCGCAACAAACAGGACGGCTCATCGGGATCCG
CTGGCGGTGGATCCGCTGGTGGCGACGGTCCCAATAACTCGCTCCTCAGT
GAGTTTGTCTACAACAACTACGCAAGCTTTCTAGACCAT
FMO12093.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1552-RB | 798 | CG1552-RB | 28..544 | 5..521 | 2555 | 99.6 | Plus |
| CG1552-RC | 1060 | CG1552-RC | 68..334 | 5..271 | 1320 | 99.6 | Plus |
| CG1552-RA | 837 | CG1552-RA | 28..294 | 5..271 | 1320 | 99.6 | Plus |
| CG1552-RC | 1060 | CG1552-RC | 374..623 | 272..521 | 1235 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11052608..11052862 | 521..267 | 1260 | 99.6 | Minus |
| X | 23542271 | X | 11053337..11053489 | 157..5 | 750 | 99.3 | Minus |
| X | 23542271 | X | 11053073..11053187 | 271..157 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:15:35 has no hits.
FMO12093.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:42:10 Download gff for
FMO12093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1552-RB | 25..544 | 1..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:08 Download gff for
FMO12093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1552-RB | 25..544 | 1..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:38 Download gff for
FMO12093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1552-RB | 25..544 | 1..521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:38 Download gff for
FMO12093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11052608..11052857 | 272..521 | 99 | <- | Minus |
| X | 11053073..11053187 | 157..271 | 100 | <- | Minus |
| X | 11053338..11053492 | 1..156 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:08 Download gff for
FMO12093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10946641..10946890 | 272..521 | 99 | <- | Minus |
| arm_X | 10947106..10947220 | 157..271 | 100 | <- | Minus |
| arm_X | 10947371..10947525 | 1..156 | 98 | | Minus |
