FMO12094.5prime Sequence
1140 bp (960 high quality bases) assembled on 2012-06-25
> FMO12094.5prime
CAGTCGACATGCGACGGGAGCGAGTGGTGCTGCTGTGCCTGGCGCTGCTC
GGATTGCAGCAGGTGTCCAGGGCCACTCTGCGTCAGTCGCGCGAAATCAT
CATCACAGATGCGGTGCGGCGCATCCAGAACGACGGCTACAACGTGGAGC
GCCACTCGGTGACGACGAAGGACGGATATGTGCTCACCCTGCACCGCATC
CCGCAGGTGGATCCCGAACTGGGCAGTCTGCTGAGACGCCCTGTCGTCTT
CCTGCTCTCCGGACTCTATGCCTCATCGGATGTGTGGCTGCTGAACGGGC
GGGAGGACTCCTTAGCCTACCTCCTTTGGCGAGCAGGATACGATGTGTGG
CTGGGAAACAACAGAGGCAACATCTACTGCCGGAAGAACATGTGGCGGAA
CACCACAGAACGGGAGTTCTGGGACTTCAGCTGGCACGAGATGGGCGTCT
ACGATTTGCCAGCCCAGGTGGATTACGTGCTCCGGACAACCGGACAGAAG
GCTATGCACTTTGTGGGGATCTCGCAGGGCGGCACCGTCTTCCTGGTCCT
CAATTCGATGATGCCACAGTATAATGCCGTTTTCAAGAGCGCCACCCTGC
TGGCCCCGGTGGCCTATGTGAGCAATACAAAGAGTGGGCTGGCCAAGGTC
ATTGGTCCAGTGCTTGGCACACGGAACTATGTCTCTAAGATGCTTGAGGG
CGTCGAGATGTTCTCCACGAACAAGTTCTTCAAGAAGTTCCTATCGATGA
CGTGTCTGGAGAACGAAAAGCCACTGGTCTGCATCAGTCGCCTGTGGCCA
GCCGTTGGCTATGACACCCGATTCCTTAACAAGACGTTATTGCCCGACCT
GATGGCCATCTTTCGGGCGGGCGGATCGGTGAAGCAGCTGATGCACTACT
TCCAGGGCTGATGTGTCCCCAGATTCCGGCAGATGACTACGGTCCCGAGC
GAATCTGGCTGCCCTATCACAACTGGGAGCACGAAGTACGCGCTGGAAAA
CGTGTCCACGCCAGTTACGTCCTTCTTCTCGGAAAACGACTACATTGTGC
GCTGGCGACATCTGGCGGATTTGCCTCACCCGGATGCCCTCGTGAAGCGT
GTAACAGGGTTCCCTGGAAGCGATGAACCCTTGCCTCTCT
FMO12094.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6753-RB | 1774 | CG6753-RB | 378..1499 | 8..1125 | 5045 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12640515..12641283 | 1049..284 | 3420 | 97.8 | Minus |
| 3R | 32079331 | 3R | 12641538..12641711 | 286..113 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 12641998..12642105 | 115..8 | 540 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:22:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2852..2912 | 355..416 | 127 | 69.4 | Plus |
FMO12094.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:58 Download gff for
FMO12094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6753-RB | 463..1513 | 1..1049 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:08 Download gff for
FMO12094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6753-RB | 372..1422 | 1..1049 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:57 Download gff for
FMO12094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6753-RB | 372..1422 | 1..1049 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:57 Download gff for
FMO12094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12640515..12641283 | 284..1049 | 97 | <- | Minus |
| 3R | 12641541..12641710 | 114..283 | 100 | <- | Minus |
| 3R | 12642000..12642108 | 1..113 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:08 Download gff for
FMO12094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8466237..8467005 | 284..1049 | 97 | <- | Minus |
| arm_3R | 8467263..8467432 | 114..283 | 100 | <- | Minus |
| arm_3R | 8467722..8467830 | 1..113 | 96 | | Minus |
