Clone FMO12095 Report

Search the DGRC for FMO12095

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:95
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG17370-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12095.5prime Sequence

1097 bp (945 high quality bases) assembled on 2012-06-25

> FMO12095.5prime
CAGTCGACATGTCGCACGGTGGAGCCGGTGGCGGTCTGGGAGCTCAAACT
GTTGGAGCCGGCCAACTTGGAGGCGGTGCAGCGGCAGCTGGCGGTGGAGA
ATACCGCGAACTCCACTGGACGGTCTCAAGCGTAATGGACTCGTCTCGGG
TCTCTACCTGCCTCATATCGATGCTGCTGATAGTCTACGGCAGCTTTCGC
TCCTTAAACATCGAGCAGGAGGCCCGCGAGCGGGAGCAGAAGAAGCGAAA
TGAATCGATGACCAATCTTCTTACCGGCGAGCCCGTCGAGAAGGAACCAA
CGGATAAATTCGCCACTCTGGACACGATGCATGCCCTCTGTTTGCCCCTC
GGAGCTTCCATCTCACTGCTCATCATGTTCTTCTTCTTCGACTCGATGCA
GCTGCTCTTCGCCGTCTGCACAACGATTATAGCCACCGTGGCGCTGGCCT
TTCTGCTGCTGCCCATGTGCCAGTACATCATCAGGCCATGCACAGATGGA
AAGCGATTCTCCTTCGGATTCTGCGGTCGCTTCACAGCCGCGGAGCTCTT
CAGCTTTACGCTTTCGGTATCGATTGTGTGCATATGGGTGCTCACTGGCC
ACTGGCTGCTAATGGATGCAATGGGCATGGGCCTGTGTGTGGCATTCATA
GCGTTTGTGCGTCTGCCCAGCTTTGAAGGTGTCTACGCTGCTGTTGACCG
GCCTGCTCATCTACGACGTCTTCTGGGTATTCCTCTCCTCGTACATCTTC
AGCACCAACGTGATGGTCAAGGTGGCGACGCGACCCGCCGATAATCCCGT
GGGCATCGTGACCAGAAAGTTGCATCTGGGTGGCATTGTGCGGGACACAC
CAAAGCTGAATCTGCCCGGAAAGCTTGTTTTTCCCAAGCCTGCAAATACC
GGTCACTTCTCTATGCTGGGCCTGGGTGAAGTGGAGGATGCCGGCCTGTT
GCTGTGCTTCGTCTGCAGTATGATGCGTACAAGAAGGCGCAGGGCGTCCA
TCGGATTCCAACATCGTCACTACCAGAGGAGTGGCTCCCGGATTGACATA
CTTCATTGTTCTAATGGGATATATTTCTGGGACTGACTACAGCGTAC

FMO12095.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
SppL-RF 2561 CG17370-RF 602..1657 8..1061 4870 98 Plus
SppL-RC 2164 CG17370-RC 205..1260 8..1061 4870 98 Plus
SppL-RB 2101 CG17370-RB 649..1704 8..1061 4870 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25886565..25886945 618..998 1565 96.3 Plus
3R 32079331 3R 25885537..25885829 8..300 1465 100 Plus
3R 32079331 3R 25886307..25886498 427..618 960 100 Plus
3R 32079331 3R 25885895..25886020 301..426 615 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 03:22:24 has no hits.

FMO12095.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:59 Download gff for FMO12095.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17370-RC 196..1219 1..1024 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:10 Download gff for FMO12095.5prime
Subject Subject Range Query Range Percent Splice Strand
SppL-RA 441..1464 1..1024 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:59 Download gff for FMO12095.5prime
Subject Subject Range Query Range Percent Splice Strand
SppL-RB 642..1665 1..1024 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:59 Download gff for FMO12095.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25885530..25885829 1..300 99 -> Plus
3R 25885895..25886020 301..426 99 -> Plus
3R 25886307..25886498 427..618 100 -> Plus
3R 25886566..25886971 619..1024 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:10 Download gff for FMO12095.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21711617..21711742 301..426 99 -> Plus
arm_3R 21712029..21712220 427..618 100 -> Plus
arm_3R 21711252..21711551 1..300 99 -> Plus
arm_3R 21712288..21712693 619..1024 96   Plus