FMO12096.5prime Sequence
1144 bp (1029 high quality bases) assembled on 2012-06-25
> FMO12096.5prime
CAGTCGACATGGCATTGTCGAAGAAACTAAGCAGCAAAATCTATCGGAGC
AGCAGACAAAAAAAAATGTTAACGTTTTGGGAAAAGACATCAAAAAAATC
AGCAGATATACCAAACCAAATCAGCGGAGCACTTGCATCAAGTAACTTAG
CTATCTGCGCCTGTCTAATAGTAATCTTCATTGCATCTGTAACCACGGCC
AAAACACCGGATCAGGAAGCTATCCATCACAAAAATGACGAATTTCCGGA
AGAGGAAAGCGACATGGTGATGGAGCCAAATGATTTTTCGCCAATCACTG
TACTAAAGTCACATGAACAACACTTTCATATGCCGCCCACAACGCATCTT
CAGCCACAAGTTCAAGCTAGAATTCATCCTAGAGTTCAACCCAGAAAATT
TCAATCCGCACTCCAACAAAATGCTGAGGAGCCATTCCGGCCCATTGCTA
ATCCAAATACGAAGATTGTTGGCGATTCTCATACGCAGGCTGCCCAAAAT
TTCTACCCACCTTTCTACCATGAGGCTCCTCCACTGGGCCATTCCAGACC
TTACTTTGGTCACGGCCCGCCTGTATCGGAAACAACTCCTTTATCCTTAC
CCCTTCCGCTCTTGACAACTCAACAGCAACAGCCAGCAACTCAGCAGCGG
ACTTTCGATGCCAGTATACTTGGAAGTGGGGATTTTGGTGTCCTTAGAGG
TGGAACCTTCTATCCGGAGGAGGAAATGCCCTATCACCCCGAAGATAACA
GTGATTACATCTATGGAGATGCTAACAATGGACACGGTCGACCATCTGAG
GGTTTTGTTCAAAAGTACACGTATCCAGAGGAGCAGTTCGCTAATTTTCG
CGATTTTGCCGATATCAACACGCCCGCCGATACGGCGTTTCGCAATTGTG
GTGGTGTATGCGGCCAAAATGCCTCTGTACCACACTCTCATCCGCATCCT
AAAAACATAATTTGAACAGTTAGAGCAGCTGGACAGGGAAAAAGAGCTGA
AAATACCGATTTGAAACAAACTTCTTCGAAATTAAGTCGAACTGCTAATA
CCAGTGCAAAAAAAAATACGAAAAAAAACGACTCGAAGTCCAGATCCTCA
GAATTAAAACCTTACTAGCTCTAGTTCAAGCTTTCAGAAACCAT
FMO12096.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32816-RF | 1834 | CG32816-RF | 253..1383 | 9..1123 | 5040 | 97.4 | Plus |
| CG32816-RE | 1730 | CG32816-RE | 149..1279 | 9..1123 | 5040 | 97.4 | Plus |
| CG32816-RA | 1821 | CG32816-RA | 240..1370 | 9..1123 | 5040 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 317161..317929 | 1003..237 | 3650 | 99.5 | Minus |
| X | 23542271 | X | 333565..333793 | 237..9 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:22:28 has no hits.
FMO12096.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:46:00 Download gff for
FMO12096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32816-RA | 238..1383 | 9..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:12 Download gff for
FMO12096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32816-RB | 224..1369 | 9..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:01 Download gff for
FMO12096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32816-RA | 240..1385 | 9..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:01 Download gff for
FMO12096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 317011..317928 | 238..1140 | 96 | <- | Minus |
| X | 333565..333793 | 9..237 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:12 Download gff for
FMO12096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 211044..211961 | 238..1140 | 96 | <- | Minus |
| arm_X | 227598..227826 | 9..237 | 100 | | Minus |
