FMO12101.5prime Sequence
758 bp (758 high quality bases) assembled on 2012-07-23
> FMO12101.5prime
CAGTCGACATGAAAATATCTCGTTTTAAGAAGTCGCACAAAACTCTGGTG
TTTTTTGCCAGCAATTTCGACTACCGGGAACCCTACCAAGTGCTAATTGA
TGCCACCTTTTGCCAAGCAGCCCTTCAGCAAAAGATTGGCATAGATGAGC
AGATTAAAAAGTACTTCCAGTGCGGCGTTAAGCTACTGACCACCCAGTGT
GTTATTCTGGAGTCGGAATCCCTGGGTGCTCCTCTCACTGGAGCCACATC
CATCGTCAAGCGATTCCATGTCCACAAATGCGGACACGAAGGAAAACCAG
TCCCCGCTTCCGAATGCATCAAATCGATGACCAAAGACAATCGCTATGTG
GTTGCCTCGCAAGATCGTCTGCTGCAGGAGAGTCTTCGCAAGATTCCCGG
ACGTTGTCTGCTCTATCTGCACAAAGCCACTCCCGTCTTGGAAGCACCAT
CTAAAGCCTCCAAGAAGTGGGTGCAACGACGGGCCAAAAACCTAATGCTG
GGCAAACAGGTCGAGAAAATCGACTACATGAAGGAGAAGCAGGGACTGAA
GCCAGCTGAAACTGCAGTCAAACCCAAGAAGCACAAAGGGCCCAAGAACC
CCAATCCATTGTCCTGCAAGAAGAGCAAAAAGGACAAGGCGAAGCAACAG
CTCAAAGGAGTTGAGCAGACCGCAATAACCAAGGCGAAACGAAAACGAGT
CAAGATCCCAGCGCACGTCAAGGCAGCGCTAGGAAAAGATGCAAGCTTTC
TAGACCAT
FMO12101.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17652-RB | 1198 | CG17652-RB | 93..825 | 8..740 | 3665 | 100 | Plus |
| CG17652-RA | 873 | CG17652-RA | 93..825 | 8..740 | 3665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1731406..1731817 | 740..329 | 2060 | 100 | Minus |
| 2L | 23513712 | 2L | 1731880..1732082 | 329..127 | 1015 | 100 | Minus |
| 2L | 23513712 | 2L | 1732144..1732264 | 128..8 | 605 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 17:55:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 5346..5383 | 560..597 | 109 | 76.3 | Plus |
FMO12101.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:31:41 Download gff for
FMO12101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17652-RA | 93..831 | 8..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:52 Download gff for
FMO12101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17652-RA | 93..831 | 8..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:46 Download gff for
FMO12101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17652-RA | 93..831 | 8..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:46 Download gff for
FMO12101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1731400..1731816 | 330..748 | 99 | <- | Minus |
| 2L | 1731880..1732080 | 129..329 | 100 | <- | Minus |
| 2L | 1732144..1732264 | 8..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:52 Download gff for
FMO12101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1731400..1731816 | 330..748 | 99 | <- | Minus |
| arm_2L | 1731880..1732080 | 129..329 | 100 | <- | Minus |
| arm_2L | 1732144..1732264 | 8..128 | 100 | | Minus |
