FMO12113.5prime Sequence
1151 bp (1061 high quality bases) assembled on 2012-07-23
> FMO12113.5prime
CAGTCGACATGAAGTTGATCCGGGGCACAACTCTTTTGGGCATCGGCATA
TTATTCGTCGGGTGCGGGGCGTTCAGCCTGCCCTCCGTTTACGATGTCCT
GTCTAAGGATCAGCAGGCCACATCCTTTGTATCAGCCAGCATAGCGGAAG
AGATAAGCCGTGAGTACCTGAAGTACCACCGAACTGGCATCGAGACGGAG
AGGCTTCGCCAGCTGGGAAAGGACATCCGGAGTAGTCACAGCAAGAAGGC
CATTTTCACGGAATCCATGGCCGATCTCACCTCAACGGACCAGTTCTTCG
TCTGCACCCTGTGCAGATCTACCATCAACGTGTTTGCTCGAACTTTCACC
GAGGGCGAGCTGAGTGGTCCGGAAAGGGATGATGAGGCGAAGAAATTGAT
GCTGGGCATGTGTGACTACTTTGCTATCAGCACCCAGGAGGTGTGCTCCG
GATTATTCGATCTCAACTGGCCGATTCTGGACTTTATTCTGAACGAAACT
GTGGCAAAGTCGAACACCTTTTGCAGCATGCTGCCCATCCCAATTTGTCA
GGTGAAACAGGATGAGTACAATCTCACCTTGTCCATCCAGGGAGACTTGC
CCCAGGAATCGAACTCCAACTTGCCCGCCAAGACCTCCGAGGATATTCTT
GTCCTGCACCTGACCGACATCCACTACGATCCTGAATACGCCGAGGGCAG
CAATGCAGCTTGCGATGAGCCCATGTGCTGCAGAAATTCCCTGCCCGAAA
GATCTGACTCGTCGGCAGCTGCTGGCTTTTGGTCTGATTACCGTGATTGT
GACTGCCCCAAACGCCTCATCCTTAGTGCTTTCGAGCACATCAAGGAAAC
CACAAGATCGAGTGGATATACCATACTGGAGATGTGCCGCCCCACAACGT
GTGGTCCACCACCAGACAGGGCAACCTGATATGTTGTCCGAAATCGACGA
ACTGCTGGCCAAGTATTTCCCGGACACGCCCATCTACCCATGTCTGAAAC
CACGAGCCACATCCAGCAATGTTTTTCGGAAACGACGAGATCCCAGCTCC
CTTAAAGTTGACTGGTTGTATGACACGGTGTGTGGAGTTTGTGGTTCCAA
TGCTGCCCGCAGGCGGAGGAAAACTGTTTCTTCAGAGAATTACCTGTGCA
T
FMO12113.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15534-RA | 2164 | CG15534-RA | 1..1118 | 9..1120 | 5210 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30432408..30433298 | 133..1019 | 4275 | 99.4 | Plus |
| 3R | 32079331 | 3R | 30432059..30432190 | 4..135 | 645 | 99.2 | Plus |
| 3R | 32079331 | 3R | 30433936..30433986 | 1024..1073 | 190 | 96.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:55:59 has no hits.
FMO12113.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:31:48 Download gff for
FMO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15534-RA | 1..1106 | 9..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:10 Download gff for
FMO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15534-RA | 1..1106 | 9..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:04 Download gff for
FMO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15534-RA | 1..1106 | 9..1110 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:04 Download gff for
FMO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30432054..30432190 | 1..135 | 97 | -> | Plus |
| 3R | 30432411..30433306 | 136..1023 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:10 Download gff for
FMO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26257776..26257912 | 1..135 | 97 | -> | Plus |
| arm_3R | 26258133..26259028 | 136..1023 | 98 | -> | Plus |
