FMO12114.5prime Sequence
860 bp (860 high quality bases) assembled on 2012-07-23
> FMO12114.5prime
CAGTCGACATGGAACCTATACTGATAGAAAAATCTCAGTGGCCAGAGCTC
AGAGATTTGTACGCGAATGATAGAACTAATCTCACGGGATTCGACTTAAT
CGAGTACTTTTTAAATTACATACCCTTATCCACAACCGAATCCATAAAGA
TATATACAACTGATACGGATTGGAGAACACATGGCAGTTATATACTAATT
CATTATTTGGAGAACAAGGCCTATATTTATATGAATACCATTAAGGGAAC
CCCAGAAGATCTTGGCAAATTGTTGAACTCTCTAAAACTTAAAGTGTTTC
ATTTAATCTGTGGCTATGAAGAACGATTCAAACCATTAGTTGAGGCATAT
TGGCTGAATTTGGGTCAAGATTTGATTAATCTTGAACACCAGGGCGCTAT
TGTTTACCACCTGCCAAGCACCGAAATTCCCAGTTGGAAACCAAGTTTGA
GTACCTCTTGCAAAGTGGCTTATATCACATCAAATCATGCCGAATTGGTC
GACAAACATTGGGCTTATCGTTCAGCTGATTCTATAACTATGATAAGGGG
TTTTATGGAGAACAATCTCGCTGTTGGTGTTTTTGATAACCAAGGAGAAC
CCCTAGCGTGGTGTCTAAGATCTCCTCATGGTAGTTTGAGTAACCTACAC
GTTTTATCCTCACATCGTCGAATGGGATTGGGTTCTTTGGCAGTGCGCTT
TATGGCTAATGAAATCAAGTTAAAGGGCTCAGAAGTTCTGGCCACAGTTG
TTCCCGAAAACGAGGGTTCGCAAAAAATGTTCGAGAAACTAGGATTCAAC
AATATCAACAAACTCTACTGGGCAGTGATACCGTGCACTTTAGCAAGCTT
TCTAGACCAT
FMO12114.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:56:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34010-RA | 876 | CG34010-RA | 18..851 | 9..842 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8010135..8010379 | 445..201 | 1225 | 100 | Minus |
| 2L | 23513712 | 2L | 8009628..8009852 | 842..618 | 1125 | 100 | Minus |
| 2L | 23513712 | 2L | 8010444..8010635 | 200..9 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 8009905..8010080 | 619..444 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:56:03 has no hits.
FMO12114.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:31:49 Download gff for
FMO12114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34010-RA | 1..837 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:12 Download gff for
FMO12114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34010-RA | 10..854 | 1..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:06 Download gff for
FMO12114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34010-RA | 10..854 | 1..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:06 Download gff for
FMO12114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8009624..8009850 | 620..846 | 99 | <- | Minus |
| 2L | 8009905..8010078 | 446..619 | 100 | <- | Minus |
| 2L | 8010135..8010379 | 201..445 | 100 | <- | Minus |
| 2L | 8010444..8010642 | 1..200 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:12 Download gff for
FMO12114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8009624..8009850 | 620..846 | 99 | <- | Minus |
| arm_2L | 8009905..8010078 | 446..619 | 100 | <- | Minus |
| arm_2L | 8010135..8010379 | 201..445 | 100 | <- | Minus |
| arm_2L | 8010444..8010642 | 1..200 | 98 | | Minus |
