FMO12115.5prime Sequence
551 bp (551 high quality bases) assembled on 2012-07-23
> FMO12115.5prime
CAGTCGACATGGAACCTGCTAAAGTGATTGGAAAGCTAAAGGAGCAAGTG
CGCATGGAGCACAATTCGCGTCGTAGTTTTCCAAAAGCTTGGAGCGAAAT
TTCGGGCAAGCAAACTAACAAGTTCTACCACCAATCTGAGATTAATTCTC
AACTAAGTAACCAGCTAAAATTAAAAGACCTGTGCCCTTTTGTGCACAAC
AACCAAGGCGAATCGCGATTCGTATCTCCGGAGATGTACAAACCTTTACT
GGCCGTCTGTCGCTGTGGGCGAACTAAGGAAAGCATCCATATGGGAAAAT
GCTTACAAAGAGCCTTGAGTCCAGATTACAAGCAAGAAATGGTACAGAAT
GGCACTGATGCATGGAGTGCAGAACCATTTAATGTGCCTTCCACTTCAAG
CTCTACCATTGGCTTCGCAGCTATTTCGAAAAACTACCAAAAGCTGGAGC
GTTCTATGCAATATGTTTCTCCTGCGTTTTCCATGCCTGGCCCTCGAATT
ACAGCAGTCCCTTACTATAATATTATTATTGGAGCAAGCTTTCTAGACCA
T
FMO12115.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:56:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34453-RB | 705 | CG34453-RB | 1..525 | 9..533 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:56:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 232848..233074 | 402..176 | 1135 | 100 | Minus |
| 3L | 28110227 | 3L | 233125..233264 | 177..38 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 232660..232790 | 533..403 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:56:05 has no hits.
FMO12115.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:31:49 Download gff for
FMO12115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34453-RB | 1..529 | 9..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:14 Download gff for
FMO12115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34453-RB | 1..529 | 9..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:08 Download gff for
FMO12115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34453-RB | 1..529 | 9..538 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:08 Download gff for
FMO12115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 232656..232790 | 403..538 | 98 | <- | Minus |
| 3L | 232848..233072 | 178..402 | 100 | <- | Minus |
| 3L | 233125..233264 | 38..177 | 100 | <- | Minus |
| 3L | 233323..233351 | 9..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:14 Download gff for
FMO12115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 232656..232790 | 403..538 | 98 | <- | Minus |
| arm_3L | 232848..233072 | 178..402 | 100 | <- | Minus |
| arm_3L | 233125..233264 | 38..177 | 100 | <- | Minus |
| arm_3L | 233323..233351 | 9..37 | 100 | | Minus |
