FMO12116.5prime Sequence
482 bp (482 high quality bases) assembled on 2012-07-23
> FMO12116.5prime
CAGTCGACATGGAACAGGCGTACAGTACAGCTTCCCGACTGCGTGGGATT
TGCGTTTGTGGATTGGCCATTTCGGTGTATTCACTGTATGTGAAAATGAA
ACTAAAGGAGGATGAGAACTATAGGCCAATGTGCGACGTTAACGATAATA
TAAGCTGCTCGCTGGTTTTTAAATCGGGCTATGGTGATGGCTTTGGTCTG
GGTAACATAACCCAAGTAAATGCTCCCAACGGAGCCATCGGCTGTGCATT
TTATATCCTGTACTTCTTGAGCTCTTTCTTTAATCATCGTTGGCTGTGCC
TGGTCCAATTGATAGTATGCACTTTGACATTACTTCTCTGCGTTTATCTG
GGTTTCCTGCTGATTCTCGTGTTTTACGATTTCTGTTTGGTATGCGTGAC
CATCTATTTCATACACACATGGCTCTTTCAGGAAGTCCTAAGGCGATATA
GACGCCTTTATATGGCAAGCTTTCTAGACCAT
FMO12116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vkor-RA | 520 | CG33544-RA | 1..456 | 9..464 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16778740..16778930 | 274..464 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 16778365..16778534 | 9..178 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 16778589..16778684 | 178..273 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:56:08 has no hits.
FMO12116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:31:50 Download gff for
FMO12116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vkor-RA | 1..467 | 9..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:16 Download gff for
FMO12116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vkor-RA | 1..467 | 9..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:10 Download gff for
FMO12116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vkor-RA | 1..467 | 9..476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:10 Download gff for
FMO12116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16778358..16778534 | 1..178 | 97 | -> | Plus |
| 2R | 16778590..16778684 | 179..273 | 100 | -> | Plus |
| 2R | 16778740..16778941 | 274..476 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:16 Download gff for
FMO12116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12666245..12666446 | 274..476 | 98 | | Plus |
| arm_2R | 12665863..12666039 | 1..178 | 97 | -> | Plus |
| arm_2R | 12666095..12666189 | 179..273 | 100 | -> | Plus |
