FMO12119.5prime Sequence
617 bp (617 high quality bases) assembled on 2012-07-23
> FMO12119.5prime
CAGTCGACATGAGCCAATACGACAATCCGTTTAAGATTATCATCCTGGGT
GACAGCGGCGTAGGCAAAACCTGCCTGCTGATGCGTTTCTCGGATAACCA
ATTCACCACAAGACACCGGAGCACTGTGGGCTTGGATAGAAGGGAGTGCA
GCGTGGAGTTTGCCGATTGGAGGATGGGGAGGATGCTGCAAGTCTGGGAC
ACCTCCGACGACGAGCGCTTCAAATTGCTGAAGGCGACCCAATGTCGCAG
TGCCCATGGCATACTGCTCGTCTACGACATAACGTCGTCCAAAAGTTTCC
AAAACATCGATGGCTGGATGAAGGAGATACGGCGCCTGTGTCCGGATAAG
GTAACCGTCCTGCTGGTGGGCAACAAAAGTGATGATCCGAACCATCGCCA
GGTGAGCATGGCGCAGGGGTTCAACTATGCCCATCGTCAGTCAATCTGCT
TTGAAGAGGTTTCCGCCAAAAGTGGAAGGAATGTATATGACATATTTAGC
TCGTTGGCAATGGACATATATACATATCGTCGTGTACATTGCAACCCGTT
CAGCTTGACATCTTGGCAGGAAGAGGAGGACGCTGCAGAGTCACTGGATG
CAAGCTTTCTAGACCAT
FMO12119.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab9Fa-RA | 871 | CG32671-RA | 68..658 | 9..599 | 2955 | 100 | Plus |
| Rab9D-RA | 897 | CG32678-RA | 94..684 | 9..599 | 2880 | 99.2 | Plus |
| Rab9E-RA | 889 | CG32673-RA | 86..676 | 9..599 | 2865 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10950373..10950963 | 599..9 | 2955 | 100 | Minus |
| X | 23542271 | X | 10589182..10589772 | 9..599 | 2880 | 99.2 | Plus |
| X | 23542271 | X | 10661168..10661758 | 599..9 | 2865 | 99 | Minus |
| X | 23542271 | X | 10622568..10623158 | 599..9 | 2820 | 98.5 | Minus |
| X | 23542271 | X | 10417496..10418080 | 9..599 | 1620 | 86 | Plus |
| X | 23542271 | X | 10951938..10952419 | 496..9 | 1070 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:56:14 has no hits.
FMO12119.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:31:51 Download gff for
FMO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9Fa-RA | 68..661 | 9..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:20 Download gff for
FMO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9Fa-RA | 68..661 | 9..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:13 Download gff for
FMO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9Fa-RA | 68..661 | 9..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:13 Download gff for
FMO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10950370..10950963 | 9..603 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:20 Download gff for
FMO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10844403..10844996 | 9..603 | 99 | | Minus |
