FMO12124.5prime Sequence
1129 bp (1008 high quality bases) assembled on 2012-07-23
> FMO12124.5prime
CAGTCGACATGGATGACTCGTTTTTCGGCTTTGACACGAATCTACCGGAC
GAAGATGGTGGCGATGGACGCATCGTCGAGGCGGAATACGATGCCCTCAA
TGACGAAACCTTTGGATCCGCTATAAATGGCGACTGGGAGGAAGCCCATG
AGACGATGGTACGCCTGGGCGGGAATGGCGAAAGGGTGCGGAAGCGACCC
GCGGAATCTAGTGGAAATACGGATTTTGCCGATCAGGGAAATGGTGCCTT
CCTGCGACACGCTAATCCGCTATCATCGGCGCCCTCTTCAAGCGGCTCCA
CTCCGGCCCCTTTGAATGCCCCCTTCCGACAGTCTCGTCACATAGGGGAC
TCGGACTTGGAGCTAAACATTTCCTCCATGAAGTTGGACGACATGGACCT
GTCCTCTTTCACCACTGATAGCGAAGCCGGTGGGCTGAGCAACCGCATTA
AGCTGGACTCCGGGGTCTGGGGATCACAGCCGTTTCCCAACAACCAACAT
TTGTTCCGCGAGCCTATGCGCAGCGCCTTCAAGCCACAGCAGCAGCAACA
TCAGCAGCACCAACCACAACAAATGAAGCCACCGCAGGAAGCGAATGCCA
ACTTTGCACTGAATCCACAGCCTTTTCCAAAAATTACAACTCTCGAGGAT
ATAGAGCGCAATATGATCATTCAGCAGCCATTCCGAAACAACAGCAGCAG
AGCCAGCAACAGGCGGAACGCAAAATGTTTGATGATTTTAGTCTGGGTAA
CAGGCAGCAGTGCCTACACCAACCATGTTGCAGCAACAGATGTTGCAGCA
GCAGCATCATCAGAAACAACAGTCGCAGCAGCAGCCGCCACAACAAGCGC
AGCACAAGGTACCCCCTGGCTTCTTGGGCACGCCGCACACCTCTCCACCG
AAGGCCAAATTTGGGTTTCCCCGGACCCGAGCTACTGCCCACGCCATCGT
CGCAGCAACAACTAAACGGTATTGGTGGCAACCGATGCCGCCCGGATTTA
TTTACCCGCAGTCTGCCCGGAATATTCCGCAATTGCCCAGCATCCTCTAT
GCACAGGCCATGCCGACAACTTTCACTGCCCGGGCGCAACAGCGACCTCT
ACCATTCCAAAGCTCTGCCCAAGACCCTG
FMO12124.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patr-1-RB | 4285 | CG5208-RB | 82..1220 | 4..1129 | 5215 | 98 | Plus |
| Patr-1-RA | 3532 | CG5208-RA | 82..1220 | 4..1129 | 5215 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17043858..17044672 | 47..859 | 3975 | 99.8 | Plus |
| 3R | 32079331 | 3R | 17044902..17045096 | 859..1049 | 715 | 96.9 | Plus |
| 3R | 32079331 | 3R | 17043645..17043689 | 4..48 | 210 | 97.8 | Plus |
Blast to na_te.dros performed 2014-11-28 17:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6855 | 755..854 | 223 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2964 | 537..865 | 220 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2659 | 532..854 | 205 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6711..6902 | 528..724 | 177 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6849 | 520..589 | 167 | 72.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 946..1042 | 503..601 | 166 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6834 | 520..595 | 161 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2487..2815 | 540..854 | 153 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..3004 | 521..717 | 147 | 59 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1119..1179 | 532..590 | 147 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6804..6872 | 532..602 | 143 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6879 | 520..589 | 142 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2789..2980 | 520..711 | 140 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2627 | 516..712 | 138 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6808 | 520..590 | 136 | 67.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1255 | 520..676 | 133 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2474 | 531..572 | 129 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6828..6901 | 516..590 | 129 | 65.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3264..3360 | 507..601 | 128 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1135 | 520..590 | 127 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1510..1594 | 513..595 | 123 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6981..7042 | 535..596 | 121 | 66.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1117..1177 | 520..578 | 120 | 68.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 8406..8460 | 686..735 | 111 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2825..2874 | 520..567 | 110 | 72 | Plus |
FMO12124.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:31:47 Download gff for
FMO12124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patr-1-RA | 76..1216 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:08 Download gff for
FMO12124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patr-1-RA | 80..1220 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:02 Download gff for
FMO12124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patr-1-RA | 80..1220 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:02 Download gff for
FMO12124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17043643..17043688 | 1..47 | 93 | -> | Plus |
| 3R | 17043859..17044672 | 48..859 | 99 | -> | Plus |
| 3R | 17044903..17045183 | 860..1129 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:08 Download gff for
FMO12124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12869581..12870394 | 48..859 | 99 | -> | Plus |
| arm_3R | 12869365..12869410 | 1..47 | 93 | -> | Plus |
| arm_3R | 12870625..12870905 | 860..1129 | 92 | | Plus |
