FMO12125.5prime Sequence
515 bp (515 high quality bases) assembled on 2012-07-23
> FMO12125.5prime
CAGTCGACATGTTCATTCCAAAAGCCAATCGTGTCGCCATCTACGAGTAC
CTCTTCAAGGAGGGTGTGCTCGTGGCCAAGAAGGACTCGCCCATCCAGAA
GCACTCCGAACTGGATAAGATTCCCAATCTGCAAGTCATCAAGGTGATGC
AGTCGCTGAACTCACGTGGCTGGGTCAAGGAGCAGTTTGCCTGGCGCCAC
TTCTACTGGTTGCTGACCAACGAGGGCATCGAGGAACTGCGCCGCTATCT
GCACTTGCCCCCGGAGATTGTGCCCTCCACTTTGACGCAAACTACTCGAT
CGAACGCAGTGCGTCCGCGCGGAGGACCAGGAGGACCCGGAGGAGGATTC
GGAGGCGCCTCCAAAACCGATGACGACAGATCGAACTACAGACGCGGTCC
AGGCGCATATGGAATGGACAAGAAAGGCGATGTGGGTGCCGGAACCGGAC
GGGTCGAATATCGTGGCGGTTTCGGTCGTGCTTCTCGCTACGACAATGCA
AGCTTTCTAGACCAT
FMO12125.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS10a-RA | 604 | CG12275-RA | 77..565 | 9..497 | 2445 | 100 | Plus |
| RpS10b-RD | 809 | CG14206-RD | 168..436 | 9..277 | 645 | 83.5 | Plus |
| RpS10b-RC | 1469 | CG14206-RC | 97..365 | 9..277 | 645 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27652836..27653324 | 9..497 | 2445 | 100 | Plus |
| X | 23542271 | X | 19598434..19598702 | 9..277 | 640 | 82.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:56:30 has no hits.
FMO12125.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:31:55 Download gff for
FMO12125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS10a-RA | 1..492 | 9..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:31 Download gff for
FMO12125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS10a-RA | 72..568 | 4..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:23 Download gff for
FMO12125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS10a-RA | 72..568 | 4..501 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:23 Download gff for
FMO12125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27652831..27653327 | 4..501 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:31 Download gff for
FMO12125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23478553..23479049 | 4..501 | 99 | | Plus |
