Clone FMO12126 Report

Search the DGRC for FMO12126

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:121
Well:26
Vector:pMK33-CFH-BD
Associated Gene/Transcriptunk-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12126.5prime Sequence

1154 bp (1050 high quality bases) assembled on 2012-07-23

> FMO12126.5prime
CAGTCGACATGTTGGCAAATGAAACGAACAAGCTGCTGCTTTCCTCGCAG
CAGGAAAAACCAAATCACTACACCTACCTGAAGGAGTTCCGCGTGGAGCA
GTGCCAGTCGTTTTTACAGCACAAGTGCAACCAGCATCGCCCCTTCGTCT
GTTTCAATTGGCATTTTCAAAACCAGCGTCGGCGTCGTCCAGTGCGAAAA
CGCGATGGCACCTTCAACTACAGTGCGGATAACTATTGCACCAAATACGA
CGAGACCACTGGGATTTGTCCCGAGGGCGACGAATGCCCCTACTTACACC
GCACTGCTGGCGACACCGAAAGGCGATACCATCTGCGCTACTACAAGACA
TGCATGTGCGTCCACGACACCGACAGCCGAGGATACTGCGTCAAGAATGG
ACTACACTGCGCCTTCGCCCACGGCATGCAGGACCAGCGCCCACCGGTTT
ATGACATCAAAGAGCTGGAGACCCTGCAGAACGCAGAGAGCACACTGGAC
AGCACTAATGCTTTGAATGCCCTGGACAAGGAGCGCAATTTGATGAACGA
GGATCCCAAGTGGCAGGACACCAACTACGTGCTGGCCAATTACAAGACAG
AGCCCTGCAAGCGCCCACCGCGCCTGTGCCGCCAAGGATACGCTTGTCCA
CAGTACCACAATAGCAAGGACAAACGTCGCTCGCCCAGAAAATACAAGTA
CAGGTCCACTCCTTGCCCCAATGTCAAGCACGGCGAGGAATGGGGAGAAC
CGGGCAACTGCGAGGCCGGCGATAACTGCCAGTACTGCCACACACGCACC
GAGCAGCAGTTCCACCCGGAGATCTACAAGTCGACCAAGTGCAACGATGT
CCAGCAGGCCGGATACTGTCCGCGCAGCGTCTTCTGCGCCTTTGCCCATG
TGGAACCTTGCTCAATGGACGATCCGCGCGAGAACTCATTGTCGGCGAGT
CTGGCCATACTAGCTTATTAACACGTTTCCTCGGCGCCAATTACATTCCT
ATACGACTCTAGTACCTCATTAACGATTTAACTTCAGTAGCTTTGCGTCA
ACATTCCCAGCAGCTCGCCTCACCTAACGTCACCAACCCATGCATCCTCT
TCAACGTGACGGCGTTCCACTTTGGCGGACTACAACTCACGATCTTCGCA
CCGA

FMO12126.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
unk-RE 5518 CG4620-RE 20..1146 9..1128 5125 97.8 Plus
unk-RC 3667 CG4620-RC 20..1146 9..1128 5125 97.8 Plus
unk-RB 2717 CG4620-RB 20..1146 9..1128 5125 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23156072..23156493 705..284 2110 100 Minus
3R 32079331 3R 23157501..23157710 283..74 1050 100 Minus
3R 32079331 3R 23155809..23156013 906..702 1025 100 Minus
3R 32079331 3R 23154881..23154967 993..907 340 97.7 Minus
3R 32079331 3R 23157779..23157843 73..9 325 100 Minus
Blast to na_te.dros performed on 2014-11-28 17:56:33 has no hits.

FMO12126.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:31:56 Download gff for FMO12126.5prime
Subject Subject Range Query Range Percent Splice Strand
unk-RB 23..1154 1..1128 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:34 Download gff for FMO12126.5prime
Subject Subject Range Query Range Percent Splice Strand
unk-RB 15..1146 1..1128 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:25 Download gff for FMO12126.5prime
Subject Subject Range Query Range Percent Splice Strand
unk-RB 15..1146 1..1128 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:25 Download gff for FMO12126.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23154845..23154967 907..1025 94 <- Minus
3R 23155809..23156011 704..906 100 <- Minus
3R 23156074..23156493 284..703 100 <- Minus
3R 23157501..23157710 74..283 100 <- Minus
3R 23157779..23157848 1..73 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:34 Download gff for FMO12126.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18980567..18980689 907..1025 94 <- Minus
arm_3R 18981531..18981733 704..906 100 <- Minus
arm_3R 18981796..18982215 284..703 100 <- Minus
arm_3R 18983223..18983432 74..283 100 <- Minus
arm_3R 18983501..18983570 1..73 94   Minus