FMO12126.5prime Sequence
1154 bp (1050 high quality bases) assembled on 2012-07-23
> FMO12126.5prime
CAGTCGACATGTTGGCAAATGAAACGAACAAGCTGCTGCTTTCCTCGCAG
CAGGAAAAACCAAATCACTACACCTACCTGAAGGAGTTCCGCGTGGAGCA
GTGCCAGTCGTTTTTACAGCACAAGTGCAACCAGCATCGCCCCTTCGTCT
GTTTCAATTGGCATTTTCAAAACCAGCGTCGGCGTCGTCCAGTGCGAAAA
CGCGATGGCACCTTCAACTACAGTGCGGATAACTATTGCACCAAATACGA
CGAGACCACTGGGATTTGTCCCGAGGGCGACGAATGCCCCTACTTACACC
GCACTGCTGGCGACACCGAAAGGCGATACCATCTGCGCTACTACAAGACA
TGCATGTGCGTCCACGACACCGACAGCCGAGGATACTGCGTCAAGAATGG
ACTACACTGCGCCTTCGCCCACGGCATGCAGGACCAGCGCCCACCGGTTT
ATGACATCAAAGAGCTGGAGACCCTGCAGAACGCAGAGAGCACACTGGAC
AGCACTAATGCTTTGAATGCCCTGGACAAGGAGCGCAATTTGATGAACGA
GGATCCCAAGTGGCAGGACACCAACTACGTGCTGGCCAATTACAAGACAG
AGCCCTGCAAGCGCCCACCGCGCCTGTGCCGCCAAGGATACGCTTGTCCA
CAGTACCACAATAGCAAGGACAAACGTCGCTCGCCCAGAAAATACAAGTA
CAGGTCCACTCCTTGCCCCAATGTCAAGCACGGCGAGGAATGGGGAGAAC
CGGGCAACTGCGAGGCCGGCGATAACTGCCAGTACTGCCACACACGCACC
GAGCAGCAGTTCCACCCGGAGATCTACAAGTCGACCAAGTGCAACGATGT
CCAGCAGGCCGGATACTGTCCGCGCAGCGTCTTCTGCGCCTTTGCCCATG
TGGAACCTTGCTCAATGGACGATCCGCGCGAGAACTCATTGTCGGCGAGT
CTGGCCATACTAGCTTATTAACACGTTTCCTCGGCGCCAATTACATTCCT
ATACGACTCTAGTACCTCATTAACGATTTAACTTCAGTAGCTTTGCGTCA
ACATTCCCAGCAGCTCGCCTCACCTAACGTCACCAACCCATGCATCCTCT
TCAACGTGACGGCGTTCCACTTTGGCGGACTACAACTCACGATCTTCGCA
CCGA
FMO12126.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unk-RE | 5518 | CG4620-RE | 20..1146 | 9..1128 | 5125 | 97.8 | Plus |
unk-RC | 3667 | CG4620-RC | 20..1146 | 9..1128 | 5125 | 97.8 | Plus |
unk-RB | 2717 | CG4620-RB | 20..1146 | 9..1128 | 5125 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:56:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23156072..23156493 | 705..284 | 2110 | 100 | Minus |
3R | 32079331 | 3R | 23157501..23157710 | 283..74 | 1050 | 100 | Minus |
3R | 32079331 | 3R | 23155809..23156013 | 906..702 | 1025 | 100 | Minus |
3R | 32079331 | 3R | 23154881..23154967 | 993..907 | 340 | 97.7 | Minus |
3R | 32079331 | 3R | 23157779..23157843 | 73..9 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:56:33 has no hits.
FMO12126.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:31:56 Download gff for
FMO12126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unk-RB | 23..1154 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:34 Download gff for
FMO12126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unk-RB | 15..1146 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:25 Download gff for
FMO12126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unk-RB | 15..1146 | 1..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:25 Download gff for
FMO12126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23154845..23154967 | 907..1025 | 94 | <- | Minus |
3R | 23155809..23156011 | 704..906 | 100 | <- | Minus |
3R | 23156074..23156493 | 284..703 | 100 | <- | Minus |
3R | 23157501..23157710 | 74..283 | 100 | <- | Minus |
3R | 23157779..23157848 | 1..73 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:34 Download gff for
FMO12126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18980567..18980689 | 907..1025 | 94 | <- | Minus |
arm_3R | 18981531..18981733 | 704..906 | 100 | <- | Minus |
arm_3R | 18981796..18982215 | 284..703 | 100 | <- | Minus |
arm_3R | 18983223..18983432 | 74..283 | 100 | <- | Minus |
arm_3R | 18983501..18983570 | 1..73 | 94 | | Minus |