FMO12130.5prime Sequence
1124 bp (1021 high quality bases) assembled on 2012-07-23
> FMO12130.5prime
CAGTCGACATGGAGCTTTTGTCGCTGCTAACACTTCTGCTATTAGCCATT
GCCTCGAATGAGGCATGTCAAGTGCAGAGCTCGTCCAGTGAAACGACCAA
GGACTGGTGGCAAACCGCCCAGTTCTATCAGATCTACCCGCGCTCCTTCA
AAGACTCCGATGGCGATGGCATTGGTGATTTGAACGGCATAACCAGCAAA
CTGGAGTATCTCAAGGACTTGGGCGTAACGGCTGCTTGGCTATCGCCTAT
CTTCAAGTCGCCCATGGTCGACTTTGGCTATGACATATCCGATTTTTTTG
ACATTCAACCGGAGTACGGAACACTCGAGGATTTTCGTACATTGATCAAG
CGAGCCAAGGAGCTGGATCTAAAGATCGTCCTGGACTTCGTACCCAACCA
TTCAAGCAACGAGAGTGAGTGGTTCCTGAAGTCGGTTAAAAGAGAGAAGG
GCTACGAGGACTACTACGTGTGGCACGACGGGAAGGTAAATTCCACCACT
GGGAAGAGGGAGCCTCCGACCAACTGGCTACAATACTTCCGTGGAAGTGC
CTGGGAGTGGAACGAGGTGCGTCAGCAGTACTACCTACACCAGTTCGCAG
TGCAACAGCCAGATCTGAACTATCGCAATCCTCTGGTTGTGGAGCAGATG
AAGCGGGTGCTGCGCTACTGGCTGAACGAGGGCGTCTCTGGATTCCGGTG
CGATGCACTGCCTCCGCTTTTTGAGGTCGTGCCCGATAGCGACGGTCAAT
TTCCGGATGAGGTTGTGAGTGGGGCCACCGAGGACAAAGAGGATCGCGAC
TATCTGACCACCACGTACATCGAAAATCAGCCAGAGACTATAGATATGGT
TTATCAGTGGCGTACTGTACTTGATGACCACAAACGCATTTTCGGGGGCA
ACTCGAGTGTCTTGCTGATAGAGACGTACTCCCCCGCCTGTTTACCATGC
AGTTCTACGGAATAGAAGCACAGAGGAGCCCACTATCCTTCAACTTCAAC
TTGATCACAGTTATGGAGCAAGCGGTCTTTTTTGGCGAGCACGTGCAGAG
CCATCGATGGTGCTTAAGGAACATTGCGCAAGTTCGCCACACCCAATTGG
GGTGCTTAGAAATCCCGACAACGA
FMO12130.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:56:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A8-RA | 1814 | CG8690-RA | 30..1147 | 9..1121 | 5055 | 97.5 | Plus |
| Mal-A7-RB | 2717 | CG11669-RB | 120..758 | 99..737 | 1320 | 80.4 | Plus |
| Mal-A7-RA | 1925 | CG11669-RA | 120..758 | 99..737 | 1320 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8471983..8472999 | 9..1021 | 4870 | 99.5 | Plus |
| 2R | 25286936 | 2R | 8470906..8471544 | 737..99 | 1320 | 80.4 | Minus |
| 2R | 25286936 | 2R | 8465296..8465862 | 105..671 | 735 | 75.3 | Plus |
| 2R | 25286936 | 2R | 8451295..8451801 | 631..125 | 495 | 73.2 | Minus |
| 2R | 25286936 | 2R | 8458892..8459083 | 104..295 | 240 | 75 | Plus |
| 2R | 25286936 | 2R | 8453751..8454100 | 129..478 | 235 | 71.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:56:44 has no hits.
FMO12130.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:31:58 Download gff for
FMO12130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8690-RA | 1..1017 | 9..1021 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:39 Download gff for
FMO12130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A8-RA | 24..1046 | 1..1021 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:30 Download gff for
FMO12130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A8-RA | 24..1046 | 1..1021 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:30 Download gff for
FMO12130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8471977..8473009 | 1..1027 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:39 Download gff for
FMO12130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4359482..4360514 | 1..1027 | 98 | <- | Plus |
