Clone FMO12133 Report

Search the DGRC for FMO12133

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:121
Well:33
Vector:pMK33-CFH-BD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12133.5prime Sequence

959 bp (959 high quality bases) assembled on 2012-07-23

> FMO12133.5prime
CAGTCGACATGCTGAACATCGTGTGTAGAGTCTGCGGAAGGCAGAAAATC
TGTGAGAAGAGCCTGAATCTCTTCGATTTGGTCAACCGAAAATATCTAAA
GCACTTGCACATGATAAGCGGACTAAGATTGGTGGATTTGGACGATGTTC
CTGGTTTCATGTGCCTTTGCTGTCAGGCGGAACTCAGATCGGCATTGGCA
TTCCGGAAGCTTTGCATTAAGACCCAAACTAAATGGCTAACCATCGAGGA
CGACTCTTCGTCGGGTGATGAAGATACCAATGACAATTCGGAACTGGAAT
CGGAAAAATGCGCATTCAGCGATTTTGGGAAAAAGAAAGAAGGCGAGTTG
GTTGAAGAAACTTTTCAGGTACTGATTGAAGAGGAGCCCATGGACAAAAC
TCTGAATAGAGATGCGAAAGCGCAGCTGAGGGAAGATGGAATAGATGTTA
AGTGTGTACCTTCACAAAAGATTATCAAAGTATCAACCAAACTGGATGAT
CAGATTTACATATGCGAGCTGTGCGGGACTCATGCCACATCGAAACCCAC
TTTCCAGCGCCACATGAGAAAACACAGAGGCGAACGACCATTTGGCTGCA
AGGATTGTGATGCCAGGTTTCTCTCTGCTGGCGAACTACGTGCCCACCAC
CGGGTACATACTGGGGAGCAACCGTTTGCCTGTCGCTTCTGCGAAAAGCG
GTATGTCAGCTACATGGGCCGGCTGATCCACGAGCGGACTCACACCAACG
ATCGACCCTATGTGTGCGAAGAGTGTGGCAAGAAGTTCACCACTGCCTAC
GTCCTAAAGAACCACATGGTCATCCACACGGGCGAGAGGAATTTCCGATG
CGATATTTGCGATCGCTCCTTCCAGAGAAAGGCGCACCTGGTAACGCACA
CCAGATCCATGATGCACCTCCCAATGTCAGAAGCAGAAGTCACAAGCTTT
CTAGACCAT

FMO12133.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11762-RA 1141 CG11762-RA 1..941 4..942 4595 99.4 Plus
CG8159-RB 1328 CG8159-RB 870..977 729..836 245 82.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8725652..8726125 129..602 2340 99.6 Plus
3R 32079331 3R 8726188..8726507 602..921 1600 100 Plus
3R 32079331 3R 8725479..8725603 4..128 610 99.2 Plus
3R 32079331 3R 8727853..8727960 729..836 240 81.5 Plus
Blast to na_te.dros performed on 2014-11-28 17:56:50 has no hits.

FMO12133.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:31:59 Download gff for FMO12133.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11762-RA 1..950 4..950 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:43 Download gff for FMO12133.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11762-RA 1..950 4..950 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:34 Download gff for FMO12133.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11762-RA 1..950 4..950 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:34 Download gff for FMO12133.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8725477..8725603 1..128 97 -> Plus
3R 8725652..8726124 129..601 99 -> Plus
3R 8726188..8726539 602..950 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:43 Download gff for FMO12133.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4551199..4551325 1..128 97 -> Plus
arm_3R 4551374..4551846 129..601 99 -> Plus
arm_3R 4551910..4552261 602..950 98   Plus