FMO12139.5prime Sequence
879 bp (879 high quality bases) assembled on 2012-07-23
> FMO12139.5prime
CAGTCGACATGAGTTACCGAATCGGCGAGGAAAAACTTGAAGTATATTAC
CAGGTATCCCTGGAACTGGTCAGGAAGTGCGGTCCGCTCTTTTTGGAGGG
TTTCCAGAAACCGAAAACCGATTACGAAGTCAAGTCAGCGTTCTATGACT
TGGTCACCGTGTACGACAAGCAAATAGAAGCCACTCTAACAGATGGTTTG
CTAAAGACCTTTCCGGAATCCAAAATAATAGGCGAAGAAGCTATGGCCAA
CGCCAAAACGCCGCCTGAGTTGACGGATGCCCCCACTTGGATCATAGATC
CCATTGATGGCACCAACAACTACGTTCGAAAGATCCCCCATTGCTGTATT
TCCGTGGGCTTGGCCATAAACAAAGAGCTGGTGCTGGGGATTGTGTACAA
TCCATCTGCAAATGAGTTGTATTCAGCTTGGCAAGGCCACGGAGCTTATT
TAAATGGACAACCCATTGAGGTTTCCAACGCTAAGAAGATAAACCAAGCA
TTGGTGTGCTATGAGATCTCCCTAATCGTGGTGTCTAAGGGGCGGGACAA
GAACGTGAAGCGTCTCTACAAGCTGGCCTCGAGTGCCACTGGCACCCGCA
GCTTTGGATGCGCAGCTCTCACGCTCTGCTATATAGCCGCCGGCAGATGT
GACGCCTATCATGTGGAGAATCTAAAGCCCTGGGATCTGGCTGGCGGTGC
GGTAATCCTCAGGGAAGCCGGTGGCAGGGTATATCACACAAGCGGTGCAA
GATTCGATGTGATGAAACCCGACTGTGTGTGCACCAGCTCTGAAGAATTG
GCCAAAAGTGTAATCCAATTGATAGAAAGGAGCCGACCAAATTAGCGGCT
ATACTTTTAAAGCAAGCTTTCTAGACCAT
FMO12139.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:57:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17028-RB | 893 | CG17028-RB | 19..871 | 8..861 | 4245 | 99.9 | Plus |
| CG17028-RA | 1140 | CG17028-RA | 19..871 | 8..861 | 4245 | 99.9 | Plus |
| CG17029-RB | 1167 | CG17029-RB | 256..980 | 58..782 | 490 | 72.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15978542..15979022 | 8..488 | 2405 | 100 | Plus |
| 3L | 28110227 | 3L | 15979467..15979735 | 592..861 | 1300 | 99.6 | Plus |
| 3L | 28110227 | 3L | 15979302..15979407 | 487..592 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 15977334..15977482 | 267..415 | 295 | 79.9 | Plus |
| 3L | 28110227 | 3L | 15978010..15978248 | 544..782 | 280 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:57:04 has no hits.
FMO12139.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:03 Download gff for
FMO12139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17028-RB | 10..874 | 1..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:53 Download gff for
FMO12139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17028-RA | 10..874 | 1..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:42 Download gff for
FMO12139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17028-RA | 10..874 | 1..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:42 Download gff for
FMO12139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15978533..15979022 | 1..488 | 99 | -> | Plus |
| 3L | 15979304..15979407 | 489..592 | 100 | -> | Plus |
| 3L | 15979468..15979738 | 593..865 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:53 Download gff for
FMO12139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15971633..15972122 | 1..488 | 99 | -> | Plus |
| arm_3L | 15972404..15972507 | 489..592 | 100 | -> | Plus |
| arm_3L | 15972568..15972838 | 593..865 | 98 | | Plus |
