Clone FMO12140 Report

Search the DGRC for FMO12140

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:121
Well:40
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG7135-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12140.5prime Sequence

1143 bp (1009 high quality bases) assembled on 2012-07-23

> FMO12140.5prime
CAGTCGACATGTCGGACGCACTGGAGGAGCCACCATTGTACCTTACGCCG
CAGTTCTTCAGGCGCACCCTGGAGCACGGATTGCAGCAGCTGGACCTGCA
GGTCATCGGTGTCCAGCTGACCAATCTGACGCGTGGCGGGGAAAACTACT
GCAGCAACATTTACCGAGCTCAGATTAAGTATCGCAATGCCGAGAGCTGC
GCAATGGAGACATCCCTGATCGTCAAGTCCATGCCGGACGAGAAGCAGGC
CATTCTGGCCCGCCTGCACATTTATAACAAGGAGACGCTTTTCTACATGC
ACATCAAGCCCAAGCTGGAGGCACTCATGTGGAGGGCGGTGGATAGTTTC
AGCGCTTGGACTTTGGCTCCCAAGCACTACTATTCCACGACCCAGCCGGA
GCAGACGATCATCCTGGAGGACCTTTGCGCCGCAGGCTATCAGTTGATTT
GCCGCCAGCTGGGTCTGGACTTTGACCACGCCGCTCTGGTGATGGCCAAA
CTGGCCGAATACCATGCCCTCACCATGGTCATGGCCGAACGGGAGCCAGA
AACCATTGTGGACCGCTATCCCTTCGGTCTGCTCCACATGGATGCCATCA
ATTCGGAGCCCTTCAAGCTGCTCTTCGGCACTCAGCTCCTAAAGCTGGCC
GCTCTGGTCGGTGACTGTGAGGGATTCGGTGGGATCACCACAAAGCTCTA
CCGCTACCACGAGCACTTCACCGAACGAGTCCTGAAGGCGGTGTACCCAC
TGCGCGGCAACCATAACGTGCTCAATCACGGCGATCTTTGGGTGAACAAC
ATATTCTTCAAGTACGATGCGGAGTACACGGTGCAGCAGGTGAAGATTAT
TGACTTCCAGCTGTGCTTCTACGGCAGCCTGGCTTCAACATCAAACTACT
TCCTGAACACCAGCTTGGAACTGGAGGTGCTACGTGACCGGCGCAGGAGC
TTGTCCACATCTACTACAGTCCCTGGTGAAATGCCTGAAGCATCTGCCCT
GTTCCAAGGAGCTGCCCAACTATGAGGATATCATGGATGAAAACAAAAAG
CGCGCAACCTACGGTTTCTTTGTGAGGCTTTCGATACCTCCCGCTGTAAG
ACGAGATCGGGGTGTAACCCAGGACATCTTCTGAAGAAAAAAT

FMO12140.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7135-RA 1518 CG7135-RA 29..1117 9..1096 5085 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18104110..18104584 374..848 2345 99.6 Plus
X 23542271 X 18103681..18104046 9..374 1830 100 Plus
X 23542271 X 18104744..18104971 849..1074 795 93.9 Plus
Blast to na_te.dros performed on 2014-11-28 17:57:06 has no hits.

FMO12140.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:03 Download gff for FMO12140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7135-RA 1..1089 9..1096 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:56 Download gff for FMO12140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7135-RA 25..1117 1..1096 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:43 Download gff for FMO12140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7135-RA 25..1117 1..1096 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:43 Download gff for FMO12140.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18103677..18104045 1..373 98 -> Plus
X 18104110..18104584 374..848 99 -> Plus
X 18104744..18104992 849..1096 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:56 Download gff for FMO12140.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17997710..17998078 1..373 98 -> Plus
arm_X 17998143..17998617 374..848 99 -> Plus
arm_X 17998777..17999025 849..1096 92   Plus