Clone FMO12146 Report

Search the DGRC for FMO12146

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:121
Well:46
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG4271-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12146.5prime Sequence

600 bp (598 high quality bases) assembled on 2012-07-23

> FMO12146.5prime
CAGTCGACATGTTGATTGGATCCTGTTGGGTGTTGATCTTATTTGCACGA
AGCTCCAATGGCATCTATAATGGAGTAGAGGCAAAGTTTGACTTCTGGAC
CTTTCTTGCCTCCGTGTGGGTAAGTGGATATCATGAGTGCGGCGGTGCTG
TGATCGACAGCCGAATTGTCCTAACAGCCGCCCAGTGCGTCAAGAATAAG
CCGGTGAAGAGAATCACAGTCCGTGTGGGAACGCCGGATATCTATAGAGG
TGGTAGAATTATCAGGGTAACAGCGCTGGTGGTTCATGAAAATTATAAGA
ATTGGGACAACGATATCGCCCTCTTATGGCTAGAGAAGCCAGTGCTTTCC
GTACGAGTGACCAAAATTCCACTGGCCACCAAAGAACCCTCTGAAAACGA
ATATCCCAGCAATGCGGGATGGGGCGAAAAACTACTCGAGTCCTACGTCG
TGACTAGAAAACTGCAAAATGGCGTTACCAAAATCCGTCCCCGGAGCATG
TGCGCTGAAGAACTTGTTGAACCGGTTGGCGAGGAACTTCTTTGCGCCTT
TTACCCCGAAAATGATATTTGTCCTGGCGATTATGGAGGTCCCTTGGTAC

FMO12146.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4271-RA 764 CG4271-RA 12..601 9..598 2935 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2285174..2285763 9..598 2935 99.8 Plus
Blast to na_te.dros performed on 2014-11-28 17:56:53 has no hits.

FMO12146.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:00 Download gff for FMO12146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4271-RA 1..591 9..600 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:45 Download gff for FMO12146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4271-RA 5..602 1..600 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:35 Download gff for FMO12146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4271-RA 5..602 1..600 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:35 Download gff for FMO12146.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2285167..2285764 1..600 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:45 Download gff for FMO12146.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2285167..2285764 1..600 99   Plus